弥合集体运动性和上皮细胞-介质细胞过渡之间的差距,通过活跃的有限的voronoi模型
Junxiang Huang1,2, Herbert Levine1,2,3, Dapeng Bi1,2
1Department of Physics, Northeastern University, Boston, Massachusetts 02215, USA. d.bi@northeastern.edu.
Soft matter
|October 5, 2023
概括
我们介绍了一个Active Finite Voronoi (AFV) 模型来研究上皮组织动态,揭示了六个阶段,包括聚合,阻塞和上皮-介质细胞过渡 (EMT). 这个模型统一集体运动和EMT动态,用于发育生物学和癌症研究.
科学领域:
- 计算生物学 计算生物学
- 生物物理学的生物物理.
- 细胞生物学 细胞生物学
背景情况:
- 表皮组织动态对于发育和疾病至关重要.
- 像基于顶点的模型这样的现有模型在捕捉活跃细胞行为方面存在局限性.
- 了解像上皮层-介质细胞过渡 (EMT) 这样的过渡是关键.
研究的目的:
- 介绍活跃有限沃罗诺伊 (AFV) 模型用于研究活跃上皮组织.
- 探索交汇和不交汇的几何及其过渡.
- 研究活跃细胞行为,组织阶段过渡和集体运动之间的相互作用.
主要方法:
- 积极有限沃罗诺伊 (AFV) 模型的开发,这是有限沃罗诺伊模型的扩展.
- 在合流和非合流的上皮质几何体内模拟活细胞.
- 分析不同的阶段和过渡,包括聚合-分离,干扰-解干扰和EMT.
主要成果:
- 在AFV模型中确定六个不同的阶段.
- 聚合-分离和动态干扰-解干扰现象的特征.
- 观测上皮层-介质细胞转换 (EMT) 和它们与集体细胞运动的整合.
结论:
- AFV模型为了解上皮组织动态提供了一个统一的框架,包括通过解堵和EMT解堵的集体运动性.
- 该模型的丰富相位图扩展到以前研究的基于顶点的模型之外.
- AFV模型为研究发育生物学和癌症转移提供了有价值的工具,并提供了模拟代码.
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