工业重要真菌的基因组规模代谢模型的进展
Yichao Han1, Albert Tafur Rangel2, Kyle R Pomraning1
1Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, USA; Agile BioFoundry, Department of Energy, Emeryville, CA, USA.
Current opinion in biotechnology
|October 5, 2023
概括
基因组规模的代谢模型 (GEMs) 对于改善真菌生物制造至关重要. 新开发的GEM,包括受酶限制的版本,增强了预测,加速了更好的生物燃料和生物产品生产的真菌菌株的发展.
科学领域:
- 生物技术是生物技术.
- 代谢工程是代谢工程.
- 菌类学 菌类学是指菌类学.
背景情况:
- 菌种对于工业生物燃料和生物产品的生产至关重要.
- 为生物制造优化真菌菌株需要对细胞代谢有深入的了解.
- 基因组规模代谢模型 (GEMs) 提供了代谢途径的整体视图和分析的框架.
研究的目的:
- 为工业相关真菌提供新开发和更新的GEM概述.
- 讨论构建受酶约束的GEM和利用流量预测的计算方法.
- 通过代的设计-构建-测试-学习循环,突出显示GEM在推动真菌生物制造中的作用.
主要方法:
- 对最近开发和更新的真菌基因组规模代谢模型的审查.
- 描述构建受酶约束GEM的计算方法.
- 解释利用来自GEMs的流量预测用于菌株发展的方法.
主要成果:
- 现在可用于工业重要真菌的几个新的和更新的GEM.
- 酶受约束的GEM可以更好地预测细胞状态和蛋白质组分配.
- 这些模型有助于系统分析和优化真菌代谢过程.
结论:
- 新开发的GEM,特别是受酶约束模型,是真菌生物制造的强大工具.
- 这些模型有助于加速开发用于生物燃料和生物制品的高性能真菌菌株.
- 在代谢工程中,GEMs对代设计-构建-测试-学习循环做出了重大贡献.
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