基因素脱乙酶复合体Rpd3S与核细胞组结合的结构
Wulong Li1, Hengjun Cui1, Zhimin Lu2,3
1Cancer Institute (Key Laboratory of Cancer Prevention and Intervention, China National Ministry of Education) of the Second Affiliated Hospital and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China.
Nature structural & molecular biology
|October 5, 2023
概括
该Rpd3S脱乙酶复合物向H3K36me3核细胞,以防止异常转录. 结构分析揭示了Sin3,Rco1和Eaf3子单元如何协调结合染色素和脱乙酸基因素.
科学领域:
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因基因.
- 该Rpd3S脱乙酶复合物被招募到H3K36甲基化核细胞中,以抑制密码转录.
- 人们对Rpd3S的组装和基板识别机制的了解仍然很少.
研究的目的:
- 阐明Rpd3S复合组合的结构基础及其与H3K36me3-修饰核细胞的相互作用.
- 了解Rpd3S如何识别和结合其染色素基质.
- 揭示Rpd3S复合物的脱乙化机制.
主要方法:
- 进行X射线晶体学以确定与核体结合的Saccharomyces cerevisiae Rpd3S的结构.
- 高分辨率结构分析 (3.1 Å) 以可视化子单元相互作用和DNA结合.
主要成果:
- 该结构揭示Sin3和Rco1子单元指挥Rpd3S组装和核细胞结合,其中Sin3-DNA相互作用作为关键.
- Rco1的PHD1域识别了H3K4,将H3尾部定位为Rpd3脱化.
- Eaf3的染色体与H3K36me3结合,并与核细胞和链接DNA相互作用,第二个Eaf3-Rco1副本与相邻的核细胞结合.
结论:
- 这项研究揭示了RPd3S染色体向和脱乙烯化背后的结构机制.
- Sin3,Rco1和Eaf3在基质识别和复杂组装中发挥着关键作用.
- 这项工作提供了对转录延长的表观遗传调节的见解.
相关概念视频
The Nucleosome Core Particle
930
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
930
The Nucleosome
1.7K
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
1.7K
Heterochromatin
13.8K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
13.8K
Nucleosome Remodeling
9.2K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.2K
Histone Modification
13.3K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
13.3K
Spreading of Chromatin Modifications
8.3K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
Writers
The writer...
8.3K


