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使用目标丰富测序解开Cereeae部落的遗传关系
Monique Romeiro-Brito1, Nigel P Taylor2, Daniela C Zappi3
1Departamento de Biologia, Centro de Ciências Humanas e Biológicas, Universidade Federal de São Carlos (UFSCar), Sorocaba, São Paulo, Brazil.
Annals of botany
|October 10, 2023
概括
这项研究使用基因组数据重建了仙人掌部落Cereeae的基因组,揭示了新的子部落,并解决了临灭绝的Cereinae子部落中的关系. 基因组数据和凝聚性推断对于理解仙人掌的进化至关重要.
科学领域:
- 植物学 植物学
- 进化生物学 进化生物学
- 基因组学就是基因组学.
背景情况:
- 仙人掌 (仙人掌) 是美国本土的临灭绝的果实植物.
- 形态趋同在历史上使仙人掌的遗传学研究复杂化.
- 之前使用塑标记物的遗传学研究缺乏像Cereeae部落这样的群体的分辨率.
研究的目的:
- 为仙人掌部落Cereeae重建一个完善的家族遗传树.
- 在Cereeae中更新suprageneric和仿制品组的分类.
- 调查Cereinae多样化的子部落中的遗传关系.
主要方法:
- 综合公开和新的目标序列数据,包括来自Cactaceae591探针集的基因组数据.
- 用于Cereinae亚族的使用密度较高的分类群抽样.
- 推断和比较连接和凝聚的遗传树.
主要成果:
- 确定了六个得到良好支持的suprageneric集群.
- 基因组数据集,特别是Cactaceae591,成功地解决了Cereinae亚族中的复杂关系.
- 凝聚性推断证明了对遗传学重建的有效性.
结论:
- 根据已解决的类别,提出Cereeae新的分类学分类.
- 建立了新的亚族:艾洛斯特里纳,乌贝尔曼尼纳和吉姆诺卡利西纳.
- 修订了现有的子族:三,雷布蒂和塞里纳.
- 突出了基因组数据和凝聚性推断对于仙人掌进化研究的有用性.
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