在神经发生过程中,基色素结构先于Kcnk9的印记表达
Daniel Loftus1, Bongmin Bae1, Courtney M Whilden1
1Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Genes & development
|October 11, 2023
概括
基因组印记调节来自一个亲代基因的基因表达. 这项研究揭示了CTCF与差异甲基化区域的结合如何建立印记色素结构,影响大脑特异性基因表达.
科学领域:
- 表观遗传学和基因组学
- 发育生物学 发展生物学
- 神经科学是一个神经科学.
背景情况:
- 基因组印记控制了原始基因的特定基因表达.
- 不同甲基化区域 (DMRs) 是印记中的关键表观遗传标记.
- 将DMR与广泛的染色质变化和基表达联系在一起的机制尚不清楚.
研究的目的:
- 为了研究Peg13-Kcnk9位点大脑特异性印记表达的机制.
- 确定高阶染色体结构在基因组印记中的作用.
- 了解CTCF对DMRs的结合如何影响印记基因调节.
主要方法:
- 区域捕获Hi-C在老鼠大脑中的相互混合交叉.
- 在体外神经元分化系统.
- 在Peg13 DMR的CTCF结合的分析.
主要成果:
- 在Peg13-Kcnk9位点识别了印记的高级染色体结构.
- 已证实基因特异性CTCF与Peg13 DMR的结合驱动着染色质结构.
- 显示的印制色素结构在神经元分化过程中先于印制表达.
- 已确认的增强剂激活会诱导印制的Kcnk9表达,这取决于染色质结构.
结论:
- 与DMRs结合的基CTCF建立了印记的更高阶染色体结构.
- 这种结构在发育过程中先行并调节印记基因表达.
- 早期建立的染色体状态可以在细胞分化时促进印记表达.
相关概念视频
Inheritance of Chromatin Structures
6.3K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
6.3K
Genomic Imprinting and Inheritance
34.6K
Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
34.6K
Chromatin Position Affects Gene Expression
23.3K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.3K
Chromatin Modification in iPS Cells
1.7K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
1.7K
Chromatin Structure Regulates pre-mRNA Processing
7.0K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
7.0K
Position-effect Variegation
6.3K
In 1928, a German botanist Emil Heitz observed the moss nuclei with a DNA binding dye. He observed that while some chromatin regions decondense and spread out in the interphase nucleus, others do not. He termed them euchromatin and heterochromatin, respectively. He proposed that the heterochromatin regions reflect a functionally inactive state of the genome. It was later confirmed that heterochromatin is transcriptionally repressed, and euchromatin is transcriptionally active chromatin.
6.3K


