Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Synthetic Biology02:55

Synthetic Biology

4.8K
Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
4.8K
Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

2.6K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.6K
Protein-protein Interfaces02:04

Protein-protein Interfaces

12.5K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.5K
Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

10.9K
Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.9K
Protein Networks02:26

Protein Networks

4.0K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.0K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

MutexaGPT: An Intuition-to-Design Translator for Physics-based Enzyme Engineering.

Research square·2026
Same author

Computational Method for the Detection of Communication Pathways in Enzymes that Correlate with Experimentally Defined Thermal Activation Networks.

The journal of physical chemistry letters·2026
Same author

Spirocyclic β-lactone secondary metabolites modulate spliceosome function.

Proceedings of the National Academy of Sciences of the United States of America·2026
Same author

Reaction-Class-Dependent Intrinsic Barriers Unify Deviant and Multimodal Bell-Evans-Polanyi Behavior in Polar Group Transfer Reactions.

Journal of the American Chemical Society·2026
Same author

Modeling the Impact of Protein Mutations on Chemical Reactions for Biochemistry, Protein Engineering, and Drug Discovery.

Journal of chemical theory and computation·2026
Same author

Correlated Motion-Based Residue Network Analysis Reveals the Distal Thermal Activation in Soybean Lipoxygenase.

bioRxiv : the preprint server for biology·2025
Same journal

Electron Alchemy with Machine-Learned Interatomic Potentials: Case Studies of Local Charge in Bond Dissociation Curves.

Journal of chemical theory and computation·2026
Same journal

Multilevel Fragmentation and Boundary Corrections for Accurate Vibrational Spectra of Large Molecules.

Journal of chemical theory and computation·2026
Same journal

Special Topics: Developments of Theoretical and Computational Chemistry Methods in Asia.

Journal of chemical theory and computation·2026
Same journal

Predicting Excited-State Energies from Ground-State Descriptors in Thermally Fluctuating π-Conjugated Molecules.

Journal of chemical theory and computation·2026
Same journal

Many-Body Theory Predictions of Positron Binding Energies in Five-Membered Heterocycles Involving N, O, S, and NH Substituents.

Journal of chemical theory and computation·2026
Same journal

<i>opt</i>-DDAP: Optimizable Density-Derived Atomic Point Charges via Automatic Differentiation.

Journal of chemical theory and computation·2026
查看所有相关文章

相关实验视频

Updated: Jul 13, 2025

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
05:08

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins

Published on: July 8, 2025

21

穆特克萨:一种用于智能蛋白质工程的计算生态系统

Zhongyue J Yang1,2,3,4,5, Qianzhen Shao1, Yaoyukun Jiang1

  • 1Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, United States.

Journal of chemical theory and computation
|October 13, 2023
PubMed
概括
此摘要是机器生成的。

Mutexa是智能蛋白质工程的计算生态系统,使研究人员能够设计具有所需功能的蛋白质变体. 该系统集成了数据库,建模软件和评分功能,用于先进的蛋白质设计.

更多相关视频

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
10:58

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

Published on: July 25, 2013

17.1K
Generic Protocol for Optimization of Heterologous Protein Production Using Automated Microbioreactor Technology
06:24

Generic Protocol for Optimization of Heterologous Protein Production Using Automated Microbioreactor Technology

Published on: December 15, 2017

10.1K

相关实验视频

Last Updated: Jul 13, 2025

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
05:08

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins

Published on: July 8, 2025

21
Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
10:58

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

Published on: July 25, 2013

17.1K
Generic Protocol for Optimization of Heterologous Protein Production Using Automated Microbioreactor Technology
06:24

Generic Protocol for Optimization of Heterologous Protein Production Using Automated Microbioreactor Technology

Published on: December 15, 2017

10.1K

科学领域:

  • 生物技术是生物技术.
  • 生物医学是生物医学.
  • 计算生物学 计算生物学

背景情况:

  • 蛋白质工程对于生物医学和生物技术的发展至关重要.
  • 目前设计具有特定功能的蛋白质变体的方法通常是复杂和耗时的.

研究的目的:

  • 介绍Mutexa,一个用于智能蛋白质工程的计算生态系统.
  • 为研究人员提供一种无的方式,以获得具有所需功能的蛋白质变异序列.

主要方法:

  • 开发IntEnzyDB:一个有关酶结构和功能的数据库.
  • 创建EnzyHTP和LassoHTP:用于高通量蛋白质建模的工作流软件.
  • 实施EnzyKR和DeepLasso:评分函数映射序列结构功能关系.

主要成果:

  • 在基准测试酶功能描述器中证明了应用.
  • 在SAM-依赖的甲基转移酶中研究了蛋白质静电和腔分布.
  • 突出了动态效应在酶催化中的作用.

结论:

  • Mutexa为智能蛋白质工程提供了基础.
  • 未来的开发旨在提高Mutexa在识别有益蛋白质突变物的能力.