植物中VQ家族基因的大规模识别和特征分析,特别是高精子

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Jinfu Tian^1,2, Jiahui Zhang^1,2, Frédéric Francis¹

¹Functional and Evolutionary Entomology, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium.

International journal of molecular sciences

|October 14, 2023

概括

这项研究在56种植物物种中确定了2469个含VQ动机 (VQ) 基因,揭示了它们的保存域,小蛋白质大小和内部缺失. 它提供了VQ基因进化和植物功能的全面分析,特别是体.

科学领域:

植物分子生物学植物分子生物学
基因组学就是基因组学.
进化生物学进化生物学

背景情况:

含VQ动机 (VQ) 蛋白质是植物生长,发育,应激反应和防御中的关键转录辅因子.
之前对VQ基因的研究范围有限,特别是缺少大规模识别和体的进化分析.

研究的目的:

系统地识别和描述各种植物物种的VQ基因,包括植物,体和血管.
研究VQ基因家族的分子和进化特征,特别关注体.
为了解VQ基因功能和在各种植物环境中的利用提供基础数据集.

主要方法:

来自56种植物物种的2469个VQ基因的全基因组识别.
对VQ基因分子特征的生物信息分析,包括氨基酸保存,蛋白质大小和内部存在.
遗传学分析将VQ蛋白分类为子组,并检查进化关系.
对染色体分布,基因重复事件和表达模式的分析,特别是在三种高精子物种 (Ginkgo biloba,Taxus chinensis,Pinus tabuliformis) 中.

主要成果:

在56种植物物种中确定了2469个VQ基因,仅在VQ域内显示出高氨基酸保护.
大多数VQ基因编码了缺乏内子的小蛋白质;GC含量在Poaceae中最高.
VQ 蛋白被分为九个子组,而体的 VQ 基因组成了11个不同的组.
协同重复被确定为VQ基因家族扩张的关键驱动因素,大多数基因和重复事件具有独立的进化轨迹.
初步查确定了可能参与植物生长,压力和防御反应的候选VQ基因.

结论:

这项研究提供了VQ基因在主要植物系的全面目录和表征.
VQ基因家族扩张受到协同重复事件的显著影响.
这些发现为未来研究VQ基因功能和植物生物学中的应用提供了宝贵的见解和资源,特别是在理解压力和防御机制方面.

关键词:

VQ家族的基因是VQ家族的基因.清晰的图形呈现.运动精子运动精子大规模的识别识别.分子和进化特征的分子和进化特征.

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