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完全解决的 Fusarium proliferatum DSM106835 基因组组合
Gouthaman P Purayil1, Amal Y Almarzooqi1, Khaled A El-Tarabily2
1Department of Biology, College of Science, United Arab Emirates University, Al Ain, 15551, United Arab Emirates.
Scientific data
|October 16, 2023
概括
一个高质量的基因组 Fusarium proliferatum (Fp) DSM106835,导致枣突然衰退综合征 (SDS) 的真菌,被组装. 本资源有助于了解FP的致病性,并制定疾病管理策略.
科学领域:
- 植物病理学 植物病理学
- 菌类学 菌类学是指菌类学.
- 基因组学就是基因组学.
背景情况:
- 突发衰退综合征 (SDS) 是阿联枣种植的重大威胁.
- 这种疾病是由土壤传播的真菌病原体Fusarium proliferatum (Fp) 引起的.
研究的目的:
- 为FPDSM106835.35生成高分辨率的染色体组织参考基因组组件.
- 为了解FP病原性和演变提供一个有价值的资源.
主要方法:
- 使用PacBio HiFi测序和Omni-C数据进行基因组组装.
- 进行了生物信息分析,以预测基因和转录,并评估组装质量 (BUSCO).
主要成果:
- 一个高质量的基因组组 Fp DSM106835 产生了 418 支架和 N50 的 4,383,091 bp.
- 组合预测了15580个基因和16321个转录,达到99.2%的完整BUSCO得分.
- 与其他七个FP菌株相比,Fp DSM106835表现出优越的连续性.
结论:
- 高质量的FP DSM106835基因组是研究其遗传学,生物学和进化历史的关键资源.
- 这项研究有助于了解参与FP致病性和SDS发展的基因和代谢物.
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