gcPathogen:人类病原体的综合基因组资源,用于公共卫生
Chongye Guo1,2, Qi Chen1,2, Guomei Fan1,2
1Microbial Resource and Big Data Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Nucleic acids research
|October 18, 2023
概括
全球病原体目录 (gcPathogen) 是一种用于病原体分析的新型基因组数据库. 它有助于监测抗生素耐药性和毒性因子,用于全球公共卫生监测.
科学领域:
- 微生物学和基因组学 微生物学和基因组学
- 生物信息学和数据科学
- 公共卫生和流行病学
背景情况:
- 准确的病原体分析对于全球卫生监测至关重要.
- 现有的基因组资源可能缺乏对各种病原体数据的全面整合.
- 监测抗生素耐药性和毒性因素需要广泛的基因组信息.
研究的目的:
- 引入全球病原体目录 (gcPathogen),这是一个手动策划的基因组资源.
- 为病原体基因组数据集成和分析提供一个集中平台.
- 支持抗菌素耐药性和毒性因素的流行病学探索和监测.
主要方法:
- 对人类病原体的基因组数据的手动策划.
- 整合来自不同来源 (患者,动物,食物,环境) 的基因组组件和相关元数据.
- 开发一个交互式Web界面,用于数据探索和查询.
主要成果:
- gcPathogen数据库包含来自细菌,真菌,病毒和寄生虫的110多万个组件.
- 它包括关于基因组,序列类型,抗生素耐药性基因和毒性因子的全面数据.
- 有一个交互式的网络平台可用于访问和分析数据.
结论:
- 在gcPathogen数据库作为一个有价值的"一站式"的病原体基因组研究.
- 它促进了全球的长期公共卫生监测和深入的基因组分析.
- 用户友好的界面可以无地查询和探索病原体数据.
相关概念视频
Genomics
36.4K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
36.4K
Genomic DNA in Prokaryotes
43.9K
The genome of most prokaryotic organisms consists of double-stranded DNA organized into one circular chromosome in a region of cytoplasm called the nucleoid. The chromosome is tightly wound, or supercoiled, for efficient storage. Prokaryotes also contain other circular pieces of DNA called plasmids. These plasmids are smaller than the chromosome and often carry genes that confer adaptive functions, such as antibiotic resistance.
Genomic Diversity in Bacteria
Although bacterial genomes are much...
Genomic Diversity in Bacteria
Although bacterial genomes are much...
43.9K
Modern Molecular Taxonomy
26
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
26
Genomic DNA in Eukaryotes
47.0K
Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
47.0K
Genome-wide Association Studies-GWAS
13.5K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
13.5K
Human Genetics
588
Human genetics provides a profound framework for understanding the interplay between genetic predispositions and human psychology. At the heart of this discipline lies the study of how genes influence physical traits, behaviors, and susceptibility to diseases. Each person carries a unique genetic code that subtly or significantly shapes their psychological and behavioral landscape.
The complex relationship between genetics and psychology is observable through common biological components such...
The complex relationship between genetics and psychology is observable through common biological components such...
588


