机器学习方法用于评估药物的TdP风险,使用心脏电生理学模型,包括个人间的变化
Yunendah Nur Fuadah1,2, Ali Ikhsanul Qauli1,3, Aroli Marcellinus1
1Computational Medicine Lab, Department of IT Convergence Engineering, Kumoh National Institute of Technology, Gumi, Republic of Korea.
Frontiers in physiology
|October 20, 2023
概括
这项研究开发了一种可靠的药物诱导心脏毒性预测系统,使用来自人类心室细胞模型和机器学习的多in silico特征. 该方法准确预测Torsade de Pointes (TdP) 风险,改善药物安全性评估.
科学领域:
- 计算生物学和药理学 计算生物学和药理学
- 心脏电生理学建模的心脏电生理学
- 机器学习在药物安全方面的应用
背景情况:
- 预测药物诱导的Torsade de Pointes (TdP) 对安全的药物开发至关重要.
- 对于TdP风险评估的单个生物标志物模型显示出局限性,特别是在未见数据的情况下.
- 使用in silico模型的多功能方法可以提供更全面的TdP风险评估.
研究的目的:
- 开发一个可靠的in silico系统来预测药物诱导的Torsade de Pointes (TdP) 风险.
- 整合来自人类心室细胞虚拟群体的多功能电生理学数据.
- 优化机器学习模型以提高TdP风险预测准确度.
主要方法:
- 使用修改后的奥哈拉-鲁迪模型生成了人类心室细胞模型的虚拟群体.
- 使用67种药物模拟药物效应,并提取了14种电生理学特征.
- 训练和评估机器学习模型 (KNN,RF,XGBoost,ANN) 使用5倍交叉验证对42种训练和25种测试药物进行训练和评估.
主要成果:
- 人工神经网络 (ANN) 模型实现了高性能.
- 该模型的准确性为:0.923,灵敏度为:0.926,特异性为:0.921,AUC为:0.964.
- 该模型在未见的药物数据上表现出良好的概括能力.
结论:
- 将电生理学模型与个体间变异和优化机器学习相结合,提供了一个可靠的TdP风险预测系统.
- 这种综合方法提高了对药物诱导心脏毒性的评估.
- 开发的系统显示了改善药物开发中的药物安全性评估的巨大潜力.
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