互惠主义以可预测的方式减少了微生物群落中基因破坏的严重程度
Jonathan N V Martinson1,2, Jeremy M Chacón1,2,3, Brian A Smith1,2
1Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN, USA.
The ISME journal
|October 21, 2023
概括
物种的相互作用塑造了微生物的进化. 互惠主义减少了突变的影响,而竞争没有,帮助复杂社区的进化可预测性.
科学领域:
- 微生物生态学 微生物生态学
- 进化生物学 进化生物学
- 基因组学就是基因组学.
背景情况:
- 预测微生物社区进化对于各种应用至关重要.
- 理解物种相互作用是预测进化轨迹的关键.
- 生态相互作用对突变适应效应的影响尚不清楚.
研究的目的:
- 研究生态相互作用 (互惠,竞争) 如何影响突变适应效应的分布.
- 为了确定社区的复杂性是否会改变物种相互作用对突变动物健康的影响.
- 评估多种微生物群落进化的可预测性.
主要方法:
- 在Salmonella enterica中创建了一个转子子突变库.
- 测量了3550个基因功能丧失突变的适应性.
- 在单一培养,两种共同培养 (与大肠杆菌,Methylorubrum extorquens) 和三种物种群体中比较适应性.
主要成果:
- 互惠主义降低了突变对健康的平均影响.
- 竞争并没有显著改变突变的平均影响.
- 在3个物种群体中的突变体适应性可以从对对相互作用中预测.
- 鉴定了S. enterica在互惠主义中获得新的维生素和氨基酸.
结论:
- 种类相互作用可预测地影响了健身效应分布.
- 多种微生物群落的进化可预测性通过了解相互作用类型来增强.
- 生态环境对于预测微生物进化至关重要.
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