UniTmp:跨膜蛋白的统一资源.
László Dobson1,2, Csongor Gerdán1, Simon Tusnády2
1Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Budapest, Magyar Tudósok körútja 2, H-1117, Hungary.
跨膜蛋白的统一数据库 (UniTmp) 为跨膜蛋白结构数据提供了一个统一的平台. 这个资源整合了多个数据库,提供了关于蛋白质拓和3D结构的全面信息.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 生物信息学是一种生物信息学.
背景情况:
- 跨膜蛋白在细胞功能中起着至关重要的作用.
- 获取这些蛋白质的综合结构和拓数据是一项挑战.
- 现有的数据库,如TOPDB,TOPDOM,PDBTM和HTP是不同的.
研究的目的:
- 创建一个统一的,全面的,可访问的跨膜蛋白结构信息资源.
- 将现有的跨膜蛋白数据库合并并提供互操作性.
- 开发一个高效的系统,提供最新的结构和拓数据.
主要方法:
- 整合来自TOPDB,TOPDOM,PDBTM和HTP数据库的数据.
- 开发一种用于并行数据服务的新型系统.
- 数万个新的结构和实验的注释.
- 统一数据库的定期更新和维护.
主要成果:
- 现在UniTmp数据库包括9235个嵌入膜结构.
- 它包含9088个序列,其中有536 035个拓注释的细分.
- 该资源还包括8692个保守局部蛋白质域/图案和5466个注释的人类跨膜蛋白.
- 已经建立了一个具有互操作性和易于更新的统一平台.
结论:
- UniTmp提供了一个集中和全面的资源,用于跨膜蛋白结构数据.
- 统一平台提高了研究人员的可访问性和可用性.
- 该数据库有助于进一步研究跨膜蛋白质结构,功能和拓学.
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