组织使用偏好和内在无序区域重塑心脏中的替代拼接衍生的蛋白形
Boomathi Pandi1, Stella Brenman1, Alexander Black1
1Department of Medicine/Division of Cardiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
bioRxiv : the preprint server for biology
|October 24, 2023
概括
替代拼接在人类心脏中产生了新的蛋白质变体,已经确定了216种非正规的异型. 这些变异,特别是那些存在于内在无序区域的变异,扩大了蛋白质组的多样性和生物功能.
科学领域:
- 蛋白质组学是指蛋白质组学.
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
背景情况:
- 替代拼接是蛋白质组多样化的关键机制.
- 了解特定人体组织 (如心脏) 中的蛋白质变异对于理解心脏功能和疾病至关重要.
研究的目的:
- 在人类心脏腔中以计算方式识别和表征替代拼接衍生的蛋白质变体.
- 研究这些新型蛋白质异构体的功能影响,特别是它们在内在无序区域中的丰富.
主要方法:
- 质谱学数据分析.
- 利用RNA测序数据库识别非正规蛋白质异型.
- 对蛋白质结合和RNA结合功能的生物信息预测.
主要成果:
- 在人类心房和心室中鉴定了216种非正规蛋白质异型.
- 发现了52种在SwissProt数据库中不存在的新异型.
- 发现了29种具有组织特异性表达的调节异型,包括心室TNS1和心房PDLIM3-2/ALP-H.
- 变异区域在内在无序的区域中得到了丰富,具有预测的蛋白质/RNA结合功能.
结论:
- 替代拼接显著扩大了人类心脏蛋白质组与新型蛋白质变体.
- 在这些变体中,内在无序的区域对于产生多样化的生物功能至关重要.
- 这种通过替代拼接来重新连接无序的区域,有助于蛋白质组的复杂性和细胞功能.
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