通过二硫化连接,使乌比奎-脱乌比奎酶复合物的联合结晶
Kristos I Negron Teron1, Chittaranjan Das1
1Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47907, USA.
Acta crystallographica. Section D, Structural biology
|October 25, 2023
概括
研究人员探索了一种更简单的方法来研究使用ubiquitin (Ub) 半氨酸突变体和二硫化物化学的双氨酸酶 (DUBs). 这种方法成功地形成了Ub-DUB复合体,有助于这些重要的酶的结构特征.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 酶学 是一种酶学.
背景情况:
- 脱基因酶 (DUB) 的结构特征通常使用复杂的化学合成来创建无处不在 (Ub) 电友.
- 研究DUB-Ub相互作用对于理解细胞过程和疾病至关重要.
研究的目的:
- 为了研究更简单的二硫化物化学是否可以用于构成共价DUB-Ub复合体,用于结构研究.
- 探索一种全方位氨酸氨酸突变物 (糖氨酸替代氨酸) 在与DUBs形成二硫化键中的实用性.
主要方法:
- 利用一种乌比基因氨酸突变物形成与各种真核生物和 prokaryotic deubiquitinases 的二硫化物结合复合体.
- 采用X射线晶体学来确定两个新型二硫化物结合的DUB-Ub复合物的结构.
主要成果:
- 不同的DUB之间,二硫化物形成的差异很大,有些DUB表现出强大的复杂化.
- 成功结晶并表征了两个二硫化物结合复合物:SdeA DUB-Ub和OtDUB-Ub.
- 观察到明显的二硫化键形成机制,包括催化氨酸 (SdeA) 和表面暴露的氨酸 (OtDUB) 的反应.
结论:
- 二硫化物化学提供了一种可行的,更简单的替代方案,用于生成用于结构分析的共价DUB-Ub复合体.
- 该研究揭示了多种DUB-Ub相互作用模式,并强调了非催化素参与复杂形成的潜力.
相关概念视频
Protein Modifications in the RER
5.2K
Modification of secretory and transmembrane proteins entering the rough ER begins in the ER lumen. These modifications aid in protein folding and stabilize the acquired tertiary structure. Protein modifications in the rough ER co-occur at different stages of protein folding.
Broadly, these modifications can be categorized into four main categories — glycosylation, formation of disulfide bonds, assembly of protein subunits, and specific proteolytic cleavages like removal of signal...
Broadly, these modifications can be categorized into four main categories — glycosylation, formation of disulfide bonds, assembly of protein subunits, and specific proteolytic cleavages like removal of signal...
5.2K
Protein Complexes with Interchangeable Parts
2.6K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.6K
The Proteasome
857
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
857
Covalently Linked Protein Regulators
6.8K
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
These groups modify specific amino acids in a protein....
6.8K
Regulated Protein Degradation
7.3K
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
7.3K


