细胞翻译的模块化生化反应网络结构
Bruno Cuevas-Zuviría1,2, Evrim Fer1,3, Zachary R Adam1,4
1Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
NPJ systems biology and applications
|October 26, 2023
概括
这项研究绘制了大肠杆菌中翻译,代谢和聚合物生物合成的生化网络. 它揭示了一个新的多式联网大众分布,表明这些网络是不同的,适应模块.
科学领域:
- 生物化学 生物化学
- 系统生物学 系统生物学
- 分子生物学分子生物学
背景情况:
- 细胞翻译是一个核心过程,与基因表达和细胞调节密切相关.
- 虽然翻译的机制是众所周知的,但它与新陈代谢和聚合物生物合成的更广泛的生物化学联系仍然未被绘制.
- 现有的知识集中在机械功能上,忽视了使翻译成为可能的整体生化网络.
研究的目的:
- 为了全面地绘制翻译,新陈代谢和聚合物生物合成之间的生化联系.
- 分析这些相互连接的细胞过程中的网络结构和化合物分布.
- 识别细胞生化网络的新型模式和特性.
主要方法:
- 构建一个多层图表,表示大肠杆菌中生物化学反应.
- 翻译,聚合物生物合成和代谢网络的分析.
- 研究这些网络中的复合质量分布和度分布.
主要成果:
- 在相互连接的生物化学网络中观察到一种新的,三模式的多模式质量分布.
- 翻译和新陈代谢网络表现出重尾度分布,与聚合物生物合成网络不同.
- 这种多模式分布表明细胞内有不同的,适应性的生化模块.
结论:
- 观察到的多模式质量度分布是生物化学层面的新发现,与生态系统模式不同.
- 翻译和新陈代谢网络作为适应性的生化模块运作,分布差距反映了复合物使用的演变.
- 这种网络分析为研究生物系统中复杂的适应现象提供了一个新的框架.
相关概念视频
Ribosomes
7.6K
Ribosomes translate genetic information encoded by messenger RNA (mRNA) into proteins. Both prokaryotic and eukaryotic cells have ribosomes. Cells that synthesize large quantities of protein—such as secretory cells in the human pancreas—can contain millions of ribosomes.
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
7.6K
Translation in Prokaryotes
24
Prokaryote translation is a complex, highly coordinated process that converts genetic information from mRNA into functional proteins. It involves three stages: initiation, elongation, and termination, each facilitated by specific molecular components.Initiation of TranslationThe process begins with the assembly of the ribosomal subunits and initiation factors on the mRNA. In bacteria, the 30S ribosomal subunit recognizes the Shine-Dalgarno sequence in the mRNA, a conserved region upstream of...
24
Initiation of Translation
33.9K
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
33.9K
Termination of Translation
25.4K
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
25.4K
Translation
142.1K
Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of...
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of...
142.1K
Ribosomal RNA Synthesis
13.2K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.2K


