规范化的多特征多位置线性混合模型用于全基因组关联研究和作物中的基因组选择
Aurélie C Lozano1, Hantian Ding2, Naoki Abe1
1IBM Research AI, IBM T.J. Watson Reseach Center, Yorktown Heights, USA.
BMC bioinformatics
|October 26, 2023
概括
本研究引入了新的规范化的多特征线性混合模型,用于基因组预测和关联研究. 这些模型有效地处理复杂的遗传数据,提高了植物育种和农业学研究的准确性.
科学领域:
- 基因组学就是基因组学.
- 量化遗传学 量化遗传学
- 植物育种 植物育种
背景情况:
- 多特征全基因组关联研究 (GWAS) 和基因组选择 (GS) 对于理解复杂特征至关重要.
- 现有的多特征线性混合模型难以处理高维基基因型数据和计算负担.
- 之前用于多特征线性模型的规范化方法忽视了人口结构和家族关系.
研究的目的:
- 为基因组学开发新的规范化的多特征线性混合模型.
- 为高维基基因型和多特征数据创建可扩展的估计方法.
- 提高基因组选择的准确性,并识别标记-特征关联.
主要方法:
- 提出了一类新的规范化的多变量线性混合模型.
- 为高维数据开发了可扩展的估计方法.
- 应用在玉米和的多样性面板上的方法.
主要成果:
- 在基因组选择 (GS) 中证明了高预测准确性.
- 成功确定了相关的标记特征关联.
- 在现实植物数据集上验证了拟议模型的有效性.
结论:
- 开发的模型对GWAS和GS都有效.
- 这些规范化的多变量线性混合模型为植物生物学和作物育种提供了进步.
- 通过提供更好的遗传见解和育种策略,促进农学研究.
相关概念视频
Multiple Allele Traits
34.3K
The Concept of Multiple Allelism
34.3K
Multiple Regression
3.0K
Multiple regression assesses a linear relationship between one response or dependent variable and two or more independent variables. It has many practical applications.
Farmers can use multiple regression to determine the crop yield based on more than one factor, such as water availability, fertilizer, soil properties, etc. Here, the crop yield is the response or dependent variable as it depends on the other independent variables. The analysis requires the construction of a scatter plot...
Farmers can use multiple regression to determine the crop yield based on more than one factor, such as water availability, fertilizer, soil properties, etc. Here, the crop yield is the response or dependent variable as it depends on the other independent variables. The analysis requires the construction of a scatter plot...
3.0K
Genome-wide Association Studies-GWAS
13.5K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
13.5K
Dihybrid Crosses
75.0K
Overview
75.0K
Trihybrid Crosses
23.4K
Trihybrid Crosses
Some of Mendel’s crosses examined three pairs of contrasting characteristics. Such a cross is called a trihybrid cross. A trihybrid cross is a combination of three individual monohybrid crosses. For example, plant height (tall vs. short), seed shape (round vs. wrinkled), and seed color (yellow vs. green).
The F1 generation plants of a trihybrid cross are heterozygous for all three traits and produce eight gametes. Upon self-fertilization, these gametes have an equal...
Some of Mendel’s crosses examined three pairs of contrasting characteristics. Such a cross is called a trihybrid cross. A trihybrid cross is a combination of three individual monohybrid crosses. For example, plant height (tall vs. short), seed shape (round vs. wrinkled), and seed color (yellow vs. green).
The F1 generation plants of a trihybrid cross are heterozygous for all three traits and produce eight gametes. Upon self-fertilization, these gametes have an equal...
23.4K
Modern Molecular Taxonomy
26
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
26


