全球Aspergillus fumigatus种群中的线粒基因组变异
1Department of Biology, Institute of Infectious Diseases Research, McMaster University, Hamilton, ON L8S 4K1, Canada.
Journal of fungi (Basel, Switzerland)
|October 27, 2023
概括
这项研究分析了Aspergillus fumigatus的线粒体基因组,揭示了39个mtSNP和79个MLG. 结果表明这种真菌病原体的广泛分散,重组和克隆扩张.
科学领域:
- 菌类学 菌类学是指菌类学.
- 基因组学就是基因组学.
- 人口遗传学 人口遗传学
背景情况:
- 阿斯伯菌是人类关键的真菌病原体,其基因组变异数据有限.
- 线粒体基因组对于真核细胞功能至关重要,但在A. fumigatus.中了解得很少.
研究的目的:
- 用全球分离物研究A. fumigatus线粒体基因组的变异.
- 了解A. fumigatus的种群结构,分散和进化动态.
主要方法:
- 对1939年A. fumigatus分离物全基因组序列数据的公开分析.
- 确定线粒体单核酸多态 (mtSNPs) 和多部位基因型 (MLGs).
- 种群遗传学,遗传学和链接不平衡分析.
主要成果:
- 39个mtSNP定义了79个不同的MLG,在各大洲和国家广泛分布.
- 由于克隆扩张,大陆差异有限,但国家差异很大.
- 有证据表明线粒基因组重组,每个核基因组平均有20个线粒基因组.
结论:
- 全球A. fumigatus种群表现出显著的线粒基因组多样性和动态.
- 广泛分散,局部克隆扩张和重组形成了线粒基因组的进化.
- 器官活力和遗传变异是A. fumigatus致病性的关键因素.
更多相关视频
09:52Histological Quantification to Determine Lung Fungal Burden in Experimental Aspergillosis
Published on: March 9, 2018
10.6K
15:01Confocal Laser Scanning Microscopy-Based Quantitative Analysis of Aspergillus fumigatus Conidia Distribution in Whole-Mount Optically Cleared Mouse Lung
Published on: September 18, 2021
3.4K
相关概念视频
Fungal Phylum Ascomycota
23
Phylum Ascomycota, a major division within the subkingdom Dikarya, comprises a diverse range of fungal species, including both unicellular yeasts and filamentous molds such as Aspergillus and Penicillium. These fungi thrive in a variety of habitats, from aquatic ecosystems to terrestrial environments, playing crucial ecological and economic roles.Morphology and ReproductionThe defining characteristic of Ascomycetes, commonly referred to as sac fungi, is the ascus—a sac-like structure that...
23
Comparing Copy Number Variations and SNPs
17.7K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
17.7K
Mutation, Gene Flow, and Genetic Drift
58.5K
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
58.5K
Mutations in Microorganisms
18
Mutations are heritable changes in an organism’s genome involving alterations in the base sequence of DNA or RNA. These changes can influence cellular processes and phenotypic traits, potentially transforming the unaltered wild type into a mutant form. Such changes, termed forward mutations, are pivotal in shaping the genetic diversity of organisms.RNA viruses exhibit the highest mutation rates due to the absence of robust proofreading mechanisms during genome replication. In contrast,...
18
Genetic Variation
297
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles,...
Genes exist in different versions called alleles,...
297
Mismatch Repair
4.9K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
4.9K
