相关实验视频
Updated: Jul 12, 2025

06:16
mirMachine: A One-Stop Shop for Plant miRNA Annotation
Published on: May 1, 2021
2.6K
通过学习miRNA和mRNA段之间的相互作用模式来识别人类miRNA目标站点
Tzu-Hsien Yang1,2, Jhih-Cheng Chen3, Yuan-Han Lee3
1Department of Biomedical Engineering, National Cheng Kung University, No.1, University Road, Tainan 701, Taiwan.
Journal of chemical information and modeling
|October 30, 2023
概括
这项研究引入了一种新的计算模型,以准确识别信使RNA (mRNA) 上的microRNA (miRNA) 结合点. 该模型克服了现有工具的局限性,提高了关键基因调节过程的预测准确性.
科学领域:
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
- 遗传学 遗传学 是一个
背景情况:
- 微RNAs (miRNAs) 通过与信使RNA (mRNA) 标结合来调节基因表达.
- 由于动物的非正规配对规则,准确识别miRNA结合点是具有挑战性的.
- 现有的计算工具存在高假阳性率.
研究的目的:
- 开发一种更准确的计算方法来预测miRNA-mRNA结合部位.
- 解决现有预测工具的局限性,包括假阳性和有偏见的训练数据.
- 为识别潜在的miRNA-mRNA相互作用提供可靠的工具.
主要方法:
- 创建了一个信息平衡的基准真相数据集,用于miRNA-mRNA结合对.
- 设计了一个新的miRNA-mRNA相互作用意识的计算模型.
- 使用接收器操作特征曲线 (auROC) 下面的面积来评估模型性能.
主要成果:
- 开发的模型在测试组中实现了94.4%的auROC.
- 在auROC.中,超过现有预测模型的性能至少为2.8%.
- 证明该模型能够表明潜在的miRNA-mRNA结合模式.
结论:
- 新模型显著提高了识别miRNA结合位点的准确性.
- 这一进展有助于理解miRNA介导的基因调节.
- 数据集和模型可供公众使用,用于研究.
相关概念视频
MicroRNAs
3.0K
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
3.0K
RNA Interference
26.1K
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
26.1K
siRNA - Small Interfering RNAs
16.8K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
16.8K
Nucleic Acid Structure
6.2K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
DNA Structure
DNA...
6.2K

