SARS-CoV-2 主蛋白酶的四维NOE-NOE光谱,以促进共振分配和结构分析
Angus J Robertson1, Jinfa Ying1, Ad Bax1
1Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Magnetic resonance (Gottingen, Germany)
|October 31, 2023
概括
通过使用先进的4D光谱学,对像SARS-CoV-2主蛋白酶这样的大型蛋白质进行核磁共振 (NMR) 研究得到了改进. 这种技术有助于克服共振分配和结构分析方面的挑战.
科学领域:
- 结构生物学 结构生物学
- 生物物理学的生物物理.
- 生物化学 生物化学
背景情况:
- 核磁共振 (NMR) 光谱对于蛋白质结构的确定至关重要.
- 大型蛋白质的NMR研究中的挑战包括交换扩展,构造灵活性和化问题.
- 由于SARS-CoV-2主蛋白酶具有很大的同位体结构 (2 x 306残留物),因此存在特定的挑战.
研究的目的:
- 开发和验证先进的NMR技术,用于研究大型和复杂的蛋白质系统.
- 为了克服像SARS-CoV-2主蛋白酶这样的蛋白质的共振分配和结构分析的局限性.
- 在大型蛋白质中有效地划分质子-质子双极松网络.
主要方法:
- 使用了四维 (4D) 的TROSY-NOESY-TROSY光谱学.
- 使用的 4D NOESY-NOESY-TROSY 光谱.
- 集成的NMR数据与现有的X射线晶体学结构信息.
主要成果:
- 证明了联合4DNMR技术用于分析大型蛋白质的有效性.
- 成功地划出了1H-1H双极放松网络.
- 为SARS-CoV-2主蛋白酶扩展和验证的共振分配.
结论:
- 4D TROSY-NOESY-TROSY和4D NOESY-NOESY-TROSY光谱的组合是大型蛋白质结构研究的强大工具.
- 这些先进的NMR方法有助于克服蛋白质共振分配和结构验证中的常见挑战.
- 这种方法提高了探测复杂蛋白质系统详细结构特征的能力.
相关概念视频
Nuclear Overhauser Enhancement (NOE)
712
Irradiation of a spin-active nucleus causes an increase or decrease in the signal intensity of neighboring nuclei that are not necessarily chemically bonded or involved in J-coupling. This phenomenon, called the Nuclear Overhauser Enhancement (NOE), results from through-space interactions between the nuclear spins. The NOE effect decreases with increasing internuclear distance and is generally not observed beyond 4 angstroms. In NOE, dipole-dipole interactions between neighboring...
712
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
868
At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
868
2D NMR: Homonuclear Correlation Spectroscopy (COSY)
1.1K
Homonuclear correlation spectroscopy, or COSY, is a 2-dimensional NMR technique that provides information about coupled protons. Typically, the geminal and vicinal coupling are observed. For example, consider the COSY spectrum of ethyl acetate, where its 1D proton NMR spectrum is plotted along the vertical and horizontal axes with their corresponding chemical shift scale. Three spots on the diagonal corresponding to the three peaks in the 1D proton spectrum are called diagonal peaks. The COSY...
1.1K
2D NMR: Overview of Homonuclear Correlation Techniques
211
Homonuclear correlation spectroscopy (COSY) is a powerful technique used in Nuclear Magnetic Resonance (NMR) spectroscopy to study the correlations between nuclei of the same type within a molecule. It provides information about scalar couplings between adjacent nuclei, which helps determine connectivity and structural information. There are several COSY variants, each with its unique strengths and experimental parameters.
COSY90 is the standard two-dimensional (2D) COSY experiment that...
COSY90 is the standard two-dimensional (2D) COSY experiment that...
211
NMR Spectroscopy of Aromatic Compounds
4.8K
Aromatic compounds can be identified or analyzed using proton NMR and carbon‐13 NMR. Typically, aromatic hydrogens or hydrogens directly bonded to the aromatic rings are strongly deshielded by the aromatic ring current. Therefore, they absorb in the range of 6.5–8.0 ppm in proton NMR spectra. For instance, aromatic hydrogens directly bonded to the benzene ring absorb at 7.3 ppm. However, aromatic hydrogens of larger rings absorb farther upfield or downfield than the ideal range.
4.8K
Spectroscopy of Carboxylic Acid Derivatives
2.4K
Infrared spectroscopy is primarily used to determine the types of bonds and functional groups. In carboxylic acid derivatives, a typical carbonyl bond absorption is observed around 1650–1850 cm−1. For esters, the absorption is recorded at around 1740 cm−1, while acid halides show the absorption at about 1800 cm−1. Another acid derivative, the acid anhydrides, exhibit two carbonyl absorption around 1760 cm−1 and 1820 cm−1, arising from the symmetrical and...
2.4K


