猪大基因组提供了关于编码遗传多样性和适应性结构变异的角色的见解
Zhengcao Li1, Xiaohong Liu2, Chen Wang2
1State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, 510006 Guangzhou, China; chyaosh@mail.sysu.edu.cn lizhc7@mail.sysu.edu.cn.
Genome research
|November 1, 2023
概括
结构变异显著影响猪的遗传多样性和适应性. 研究人员发现了新的基因和可转移元素,揭示了它们在免疫力和局部适应中的作用,特别是在西藏野猪中.
科学领域:
- 基因组学就是基因组学.
- 动物遗传学动物遗传学
- 进化生物学 进化生物学
背景情况:
- 结构变异 (SVs) 驱动基因组进化和表型多样性.
- 它们在养动物 (尤其是猪) 适应过程中的作用还未得到充分研究.
研究的目的:
- 为了表征猪的编码序列存在/不存在变异 (PAVs).
- 为了研究猪移动组和可转移元素插入多态 (TIPs).
- 了解 SVs 对猪遗传多样性和适应性的贡献.
主要方法:
- 从32个欧亚猪品种的250个个体构建了一个泛基组.
- 系统地确定编码序列PAV和新基因.
- 分析了可转换元素 (TE) 插入多态 (TIP) 和它们的群体动态.
主要成果:
- 确定了308.3 Mb的非参考序列和3438个新基因.
- 发现16.8%的基因经历PAV,其中一些与适应有关 (例如,新型猪白细胞抗原 (SLA) 基因和PRRSV耐药性).
- 从970个TE家族中特征490,480个TIP,适应性TIP影响西藏野猪的缺氧,骨,心脏和神经元发育.
结论:
- 包括PAV和TIP在内的SV代表了猪中显著的隐藏遗传多样性.
- 这些变异在猪和潜在的其他哺乳动物的进化适应中起着至关重要的作用.
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