光催化接介导的DNA链移位反应
Anupam Singh1, Gayatri Patel1, Smita S Patel1
1Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, New Jersey 08854, United States.
Journal of the American Chemical Society
|November 2, 2023
概括
人类线粒体DNA螺旋酶Twinkle显著加速自发的脚介导链位移 (TMSD) 反应. 这种无酶催化增强了DNA纳米技术的应用,显著增加了反应速度和灵敏度.
科学领域:
- 生物化学
- 分子生物学
- 纳米技术
背景情况:
- 链交换是DNA修复,重组和基因组编辑的基础.
- 在DNA纳米技术中,自发脚介导的链位移 (TMSD) 是至关重要的,但由于反应速度缓慢而受到限制.
研究的目的:
- 研究人类线粒体DNA螺旋酶Twinkle加速TMSD反应的潜力.
- 阐明Twinkle增强TMSD的机制.
主要方法:
- 研究了Twinkle对TMSD反应动态的影响.
- 进行了机械研究以了解Twinkle在对接步骤的催化作用.
- 评估了Twinkle催化TMSD的ATP独立性和对基对不匹配的敏感性.
主要成果:
- 闪加速了TMSD反应的6000倍
- 在不需要ATP的情况下,Twinkle催化了TMSD的限制速度的对接步骤.
- 闪催化TMSD仍然对基对不匹配敏感.
结论:
- 人类线粒体DNA螺旋酶Twinkle显著提高了TMSD反应速率.
- 闪催化TMSD为DNA纳米技术应用提供了可调和快速的方法.
- 这一进步对于需要灵敏检测和快速响应的应用非常有价值.
相关概念视频
Translesion DNA Polymerases
10.0K
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
10.0K
Homologous Recombination
50.6K
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
50.6K
Restarting Stalled Replication Forks
5.8K
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
5.8K
The Replisome
33.6K
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
33.6K
Lagging Strand Synthesis
52.5K
During replication, the complementary strands in double-stranded DNA are synthesized at different rates. Replication first begins on the leading strand. Replication starts later, occurs more slowly, and proceeds discontinuously on the lagging strand.
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
52.5K
DNA Topoisomerases
31.4K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
31.4K


