通过基于患者代谢数据的无监督机器学习集群方法定义的患者组的生存分析
Caroline Bailleux1,2, David Chardin3,2, Jean-Marie Guigonis2
1University Côte d'Azur, Centre Antoine Lacassagne, Medical Oncology Department, Nice F-06189, France.
Computational and structural biotechnology journal
|November 3, 2023
概括
在代谢学数据上的无监督机器学习 (ML) 可以预测非转移性乳腺癌患者的无进展生存率. PCA k-平均值显示出最有效的预测,突出了ML的ML.
科学领域:
- 在瘤学瘤学.
- 生物信息学是一种生物信息学.
- 代谢学 代谢学 代谢学
背景情况:
- 在非转移性乳腺癌中预测化疗疗效仍然具有挑战性.
- 代谢学为识别患者子组提供了潜在的潜力.
- 之前的工作确定了使用无监督机器学习 (ML) 的三个患者群.
研究的目的:
- 评估非转移性乳腺癌患者的生存结果.
- 评估无监督ML方法对代谢数据的有用性,以预测存活率.
- 扩大后续数据以进行可靠的生存分析.
主要方法:
- 对49名非转移性乳腺癌患者的回顾性分析.
- 使用LC-MS (449种代谢物) 从瘤样本中提取代谢物.
- 应用5种无监督的ML方法,并对生存预测进行引导优化.
主要成果:
- PCA k-means,K-sparse和光谱聚类有效预测了2年无进展生存期 (PFSb).
- PCA k-平均值显示了PFSb预测的最高可重现性 (HR=2,95% CI [1.4-2.7]).
- 在针对癌症特异性存活率 (CSS) 和整体存活率 (OS) 分析的ML方法之间观察到差异.
结论:
- 对代谢数据的无监督ML是预测乳腺癌PFS的可行方法.
- 对于这种应用,PCA k-means 是一个有希望的方法.
- 需要进行更大规模的研究来验证CSS和OS的发现.
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