在小鼠发育过程中对H3K9me3和DNA甲基化共同标记的CpG丰富区域的表征
Hui Yang1, Yiman Wang1, Yong Zhang2
1Institute for Regenerative Medicine, Department of Neurosurgery, Shanghai East Hospital, Shanghai Key Laboratory of Signaling and Disease Research, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China.
BMC genomics
|November 4, 2023
概括
在小鼠发育过程中分析了具有H3K9me3和DNA甲基化标记 (CHM) 的CpG丰富区域. 这些CHM存在于euchromatin中,可以使特定的长端重复沉默.
科学领域:
- 表观遗传学和发育生物学
- 基因组学和分子生物学
背景情况:
- 众所周知,由H3K9me3和DNA甲基化 (CHM) 共同标记的CpG丰富区域在小鼠早期发育中很重要.
- 它们在其他生物过程中的特征和作用在很大程度上仍未被探索.
研究的目的:
- 在六个不同的小鼠发育过程中全面描述CHM.
- 阐明超出植入前阶段的CHM的独特特征和监管功能.
主要方法:
- 对H3K9me3和DNA甲基化模式的全基因组分析.
- 在不同发展阶段识别和描述共同标记的CpG丰富地区 (CHM).
- 对CHM与非CHM CpG丰富地区进行比较分析.
主要成果:
- 在六个小鼠发育过程中,确定了超过2600个稳定的CHM.
- CHM 呈现出独特的特征,包括H3K9me3信号升高和在euchromatin中的定位.
- CHM显示出在制较年轻的长终端重复 (LTR) 中的潜在作用,特别是ERVK子家族.
结论:
- 这项研究提供了各种小鼠发育背景下的CHM的全面特征.
- 这些发现扩大了对CpG丰富地区及其表观遗传标记的监管作用的理解.
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