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相关概念视频

Circadian Rhythms and Gene Regulation02:19

Circadian Rhythms and Gene Regulation

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The biological clock is involved in many aspects of regulating complex physiology in all animals. It was in 1935 when German zoologists, Hans Kalmus and Erwin Bünning, discovered the existence of circadian rhythm in Drosophila melanogaster. However, the internal molecular mechanisms behind the circadian clock remained a mystery until 1984, when Jeffrey C. Hall, Michael Rosbash, and Michael W. Young discovered the expression of the Per gene oscillating over a 24-hour cycle. In subsequent...
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Spreading of Chromatin Modifications

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The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
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Heterochromatin02:38

Heterochromatin

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The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
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Chromatin Immunoprecipitation- ChIP02:36

Chromatin Immunoprecipitation- ChIP

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Chromatin immunoprecipitation, or ChIP, is an antibody-based technique used to identify sites on DNA that bind to transcription factors of interest or histone proteins. It also helps determine the type of histone modifications such as acetylation, phosphorylation, or methylation.
Types of ChIP
ChIP can be divided into two types - X-ChIP and N-ChIP. X-ChIP involves in vivo cross-linking of histones and regulatory proteins to DNA, fragmenting the DNA by sonication, and isolating the protein-DNA...
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Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

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Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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相关实验视频

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Monitoring Cell-autonomous Circadian Clock Rhythms of Gene Expression Using Luciferase Bioluminescence Reporters
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ATAC-时钟:基于染色质可访问性的衰老时钟.

Francesco Morandini1, Cheyenne Rechsteiner1, Kevin Perez2

  • 1Department of Biomedical Sciences, University of Lausanne, Lausanne, Switzerland.

GeroScience
|November 4, 2023
PubMed
概括
此摘要是机器生成的。

研究人员使用染色体可访问性开发了一种新的表观遗传衰老时钟,它可以准确预测年龄,并与基因表达变化有关. 这种染色质可访问性时钟在年龄预测方面胜过了转录基因时钟.

关键词:
ATAC 测序的测序方法衰老的衰老 衰老的衰老生物标志物生物标志物染色体的可访问性 染色体的可访问性基因表观时钟是什么?

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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
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A Filtration-based Method of Preparing High-quality Nuclei from Cross-linked Skeletal Muscle for Chromatin Immunoprecipitation
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科学领域:

  • 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
  • 基因组学就是基因组学.
  • 衰老研究研究 衰老研究

背景情况:

  • 建立了基于DNA甲基化的衰老时钟,但存在解释性问题.
  • 其他表观遗传特征对年龄预测的潜力在很大程度上仍未被探索.
  • 以前的DNA甲基化时钟显示与基因表达的相关性有限,质疑它们的生物相关性.

研究的目的:

  • 研究染色质可访问性作为新型表观遗传衰老时钟的基础.
  • 评估染色体可访问性变化与衰老过程中的基因表达之间的关系.
  • 为了比较染色质可访问性时钟与转录性时钟的性能.

主要方法:

  • 收集了159名人类捐献者的血液样本.
  • 关于染色质可访问性,转录学和细胞组成的生成数据.
  • 使用染色体可访问性特征构建了一个衰老的时钟模型.

主要成果:

  • 开发了一种基于染色质可访问性的新型衰老时钟,中位数绝对误差为5.27年.
  • 观察到染色质可访问性变化和转录基因变化之间的强烈相关性.
  • 证明染色质可访问性时钟显著优于匹配的转录基因时钟.

结论:

  • 使用染色体可访问性,可以有效地构建表观遗传衰老时钟.
  • 染色体可访问性改变是细胞内在的,与转录性变化直接相关.
  • 这种方法为表观遗传年龄预测提供了一个比转录基因钟更可解释和更准确的方法.