AFRbase:一个负责抗真菌耐药性的蛋白质突变数据库
Aakriti Jain1, Neelja Singhal1, Manish Kumar1
1Department of Biophysics, University of Delhi South Campus, New Delhi 110021, India.
Bioinformatics (Oxford, England)
|November 10, 2023
概括
一个新的数据库,AFRbase,列出了导致真菌抗真菌耐药性的突变. 本资源有助于了解耐药性机制,并支持基因型敏感性测试,以改善临床和农业抗真菌策略.
科学领域:
- 菌类学 菌类学是指菌类学.
- 遗传学 遗传学 是一个
- 生物信息学是一种生物信息学.
背景情况:
- 在全球范围内,真菌感染导致显著的死亡率.
- 由于临床和农业使用,抗真菌药物耐药性正在增加.
- 关键蛋白质中的点突变是真菌耐药性的主要驱动因素.
研究的目的:
- 开发一个全面的抗真菌耐药性的突变数据库.
- 为了解抗真菌耐药机制提供资源.
- 为了促进基因型敏感性测试和预测耐药性演变.
主要方法:
- 通过文本挖掘和手动策划收集数据.
- 开发抗真菌耐药性数据库 (AFRbase).
- 包括2D和3D格式的突变可视化.
主要成果:
- 在32种真菌物种中,AFRbase包含29种蛋白质中的3691个独特突变.
- 数据库详细介绍了每个突变所赋予的耐药性.
- 与现有数据库 (FunResDB,MARDy) 相比,AFRbase提供了增强的数据范围和信息.
结论:
- AFRbase对于研究人员和临床医生来说是一个有价值的,开放的资源.
- 该数据库支持研究和预测抗真菌耐药性的演变.
- AFRbase可以帮助对真菌病原体进行基因型敏感性测试.
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