广泛的CRISPR:多位gRNA的组合设计和广泛的多重位目标的发现
Alaguraj Veluchamy1,2, Kaian Teles3, Wolfgang Fischle4
1Bioscience Program, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology (KAUST), 23955-6900, Thuwal, Kingdom of Saudi Arabia. alaguraj.veluchamy@stjude.org.
Scientific reports
|November 12, 2023
概括
CRISPR-broad是一种新的开源工具,用于设计指导RNA (gRNA),这些RNA针对基因组中的多个特定位置. 这推动了基因组编辑应用,如绘图和表观基因组修改.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
背景情况:
- 克里斯普尔-卡斯基因组编辑依赖于指导RNA (gRNAs) 进行DNA向.
- 目前的gRNA设计工具仅限于单个位置的准,阻碍了需要更广泛的基因组访问的应用程序.
研究的目的:
- 开发一种新的计算工具,CRISPR-broad,用于设计能够准多个特定基因组区域的gRNA.
- 为了实现先进的全基因组应用,如绘图和表观基因组编辑.
主要方法:
- CRISPR-broad使用了一种新的聚合gRNA评分系统,考虑了目标和非目标站点.
- 该应用程序识别了针对用户定义的大型连续或扩散基因组区域的gRNA.
主要成果:
- 在模型生物 (C. elegans,H. sapiens) 中,CRISPR广泛成功识别了多重向的gRNA.
- 该工具有效地对潜在的目标地区进行了排名,这些地区已被优化为广泛的基因组向.
- 在使用dCas9-GFP的大型人类基因组元素的细胞映射中证明了实用性.
结论:
- CRISPR-broad是一个高效的开源应用程序,用于设计多重定位的gRNAs.
- 该工具扩展了基于CRISPR的基因组编辑功能,用于大规模的基因组应用.
相关概念视频
CRISPR/Cas9 Genome Editing
17
The CRISPR-Cas system serves as a bacterial defense mechanism against invading genetic elements such as viruses and plasmids, forming the foundation for its adaptation as a powerful genome-editing tool. Originally discovered in prokaryotes, this system has been repurposed to revolutionize genetic engineering across a wide range of organisms, including plants, animals, and humans. The core component, Cas9, is an endonuclease derived from Streptococcus pyogenes, capable of introducing...
17
CRISPR
51.9K
Genome editing technologies allow scientists to modify an organism’s DNA via the addition, removal, or rearrangement of genetic material at specific genomic locations. These types of techniques could potentially be used to cure genetic disorders such as hemophilia and sickle cell anemia. One popular and widely used DNA-editing research tool that could lead to safe and effective cures for genetic disorders is the CRISPR-Cas9 system. CRISPR-Cas9 stands for Clustered Regularly Interspaced...
51.9K
CRISPR and crRNAs
17.0K
Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
17.0K
Homologous Recombination
50.6K
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
50.6K
Conservative Site-specific Recombination and Phase Variation
6.0K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
6.0K


