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相关概念视频

The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

13.0K
The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
13.0K
Assembly of Signaling Complexes01:30

Assembly of Signaling Complexes

5.8K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
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Molecular Orbital Theory I02:35

Molecular Orbital Theory I

32.2K
Overview of Molecular Orbital Theory
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Ligand Binding and Linkage00:49

Ligand Binding and Linkage

4.8K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.8K
Ligand Binding Sites02:40

Ligand Binding Sites

7.7K
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Conserved Binding Sites01:49

Conserved Binding Sites

4.2K
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
4.2K

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相关实验视频

Updated: Jul 11, 2025

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
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Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis

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对于与SymDOCK结合在对称堆中的分子进行对接.

Matthew S Smith1,2, Ian S Knight1, Rian C Kormos1,2

  • 1Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.

bioRxiv : the preprint server for biology
|November 14, 2023
PubMed
概括

我们开发了SymDOCK,这是一种新的计算方法,用于发现与tau蛋白粉样纤维结合的配体. 这种方法有效地通过利用纤维结构的固有对称性来预测连接体-蛋白相互作用.

科学领域:

  • 计算化学和结构生物学
  • 神经科学和药物发现

背景情况:

  • 识别tau蛋白粉样纤维的配体对于理解神经退行性疾病至关重要.

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Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis

Published on: June 20, 2025

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Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
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  • 连接体通常在tau纤维内以对称的堆结合,主要与彼此相互作用,而不是与蛋白质相互作用.
  • 结论:

    • SymDOCK是一种有效的工具,用于识别粉样纤维的新型对称堆叠配体.
    • 该方法加速了对病的潜在治疗和诊断剂的发现.
    • 未来的应用包括对新的对称堆器进行大规模的图书馆选.