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Updated: Jul 11, 2025

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Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes
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在ELM-eukaryotic线性动机资源-2024更新更新
Manjeet Kumar1, Sushama Michael1, Jesús Alvarado-Valverde1,2
1Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Nucleic acids research
|November 14, 2023
概括
细胞线性基因 (ELM) 资源数据库已更新,增加了39个新的基因类和346个实例. 这一更新增强了生物医学研究人员对蛋白质调节和病原体相互作用的理解.
科学领域:
- * 分子生物学 * 分子生物学
- * 生物信息学是一门学科.
- * 结构生物学 * 结构生物学
背景情况:
- * 短线性图案 (SLiM) 对于真核蛋白的功能和调节至关重要.
- *SLiMs是丰富的,特别是在翻译后的修改,是病原体的目标.
- *真核线性动机 (ELM) 资源提供了一个精心策划的SLiM数据库.
研究的目的:
- * 报告ELM资源数据库的2024年更新.
- * 以突出显示新注释的图案实例和类.
- *将ELM数据与其他蛋白质资源 (如InterPro) 整合在一起.
主要方法:
- *从科学文献中手动整理SLiM实例.
- * 由一群熟练的注释者进行注释.
- * 将数据与InterPro蛋白质模块资源集成.
主要成果:
- *2024年ELM更新增加了39个新的图案类和346个新型图案实例.
- * 数据库现在包含356个主题类和4283个实例,来自4274个出版物.
- *包括700多个链接到实验确定的3D结构.
结论:
- *更新的ELM资源扩展了SLiM功能在免疫和退化等领域的知识.
- * 增强的数据有助于生物医学研究蛋白质调节和病原体模拟.
- *与InterPro的集成增加了ELM数据的可发现性和实用性.
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