从单点度计算和元素组成中得出的目标-合物结合亲和力.
Viktor Szél1, Balázs Zoltán Zsidó1, Norbert Jeszenői1
1Pharmacoinformatics Unit, Department of Pharmacology and Pharmacotherapy, Medical School, University of Pécs, Szigeti út 12, 7624 Pécs, Hungary. hetenyi.csaba@pte.hu.
Physical chemistry chemical physics : PCCP
|November 15, 2023
概括
一种新的计算方法,QMH-L,通过包括电子和水效应,快速估计目标连接体结合的自由能量. 该工具通过提供准确的热力学数据来帮助药物设计,用于虚拟查和连接体工程.
科学领域:
- 计算化学是一种计算化学.
- 生物物理学的生物物理.
- 药物发现 药物发现
背景情况:
- 准确的目标-连接体结合热力学对于药物设计至关重要.
- 现有的理论方法往往忽略了电子效应和水分子.
- 需要有效的计算工具来预测约束热力学.
研究的目的:
- 引入QMH-L,一个用于估计目标-联结结合的自由能量的快速计算器.
- 将电子效应和明确的水分子纳入绑定能量预测中.
- 为了实现药物候选物和带工程的快速,自动评分.
主要方法:
- QMH-L使用预先优化的目标连接体复合结构.
- 它结合了半经验性的量子力学,以结合能与一个连接体元素组成描述器.
- 预测并包括界面上的明确水分子.
主要成果:
- 据QMH-L估计,结合的自由能量具有0.94 kcalmol-1.1的根平均平方误差.
- 计算的结合值与实验性异热定位热量计数据有很好的一致性.
- 该方法使用各种蛋白质标和大型联体进行了验证.
结论:
- QMH-L提供了一个计算上便宜且快速的方法来预测结合热力学.
- 计算器有效地处理电子效应和水分子.
- QMH-L适用于虚拟选,连接体设计和理解复杂的相互作用.
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