在Agbiodata联盟的农业遗传学,基因组学和育种数据库和资源中共享数据和使用本体学
Jennifer L Clarke1, Laurel D Cooper2, Monica F Poelchau3
1Department of Statistics and Department of Food Science and Technology, University of Nebraska-Lincoln, 340 Hardin Hall North Wing, Lincoln, NE 68583, USA.
Database : the journal of biological databases and curation
|November 16, 2023
概括
农业数据共享是健康的,但本体学的使用仍然停滞不前. 建议包括培训,进一步研究元数据共享,并促进数据标准,以提高农业遗传学和基因组学数据的互操作性和可访问性.
科学领域:
- 农业科学 农业科学
- 生物信息学是一种生物信息学.
- 基因组学就是基因组学.
背景情况:
- 该AgBioData联盟协调了许多农业遗传学,基因组学和育种数据库.
- 为了促进FAIR数据管理和数据集集成,需要强大的数据共享和标准化的词汇/本体.
- 两个工作组调查了成员数据库的数据共享和本体学使用情况.
研究的目的:
- 评估AgBioData联盟成员关于数据共享和本体学使用的现状和未来需求.
- 确定农业研究数据库中需要改进的数据管理实践领域.
- 为提高数据可访问性和互操作性的战略提供信息.
主要方法:
- 在成员数据库中进行了整个联盟的调查.
- 代表37个数据库的33名研究人员回应了调查.
- 评估了调查结果,以确定数据共享和本体学应用的趋势和需求.
主要成果:
- 在AgBioData数据库中数据共享实践似乎处于健康状态,尽管全面的元数据和数据类型共享是不确定的.
- 自2017年调查以来,本体论的使用显示出最小的变化.
- 确定了培训,进一步调查元数据共享,社区外展和改进表型数据处理的重大需求.
结论:
- 虽然数据共享正在取得进展,但在本体学采用和编程数据共享方面需要加强努力.
- 建议包括有针对性的培训,对元数据共享的更深入分析,社区参与,以及解决数据标准和可持续性等特定障碍.
- 这些领域的改进将促进共享农业数据资源的更大发展和利用.
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