Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Morphoelectric Diversity and Specialization of Neuronal Cell Types in the Primate Striatum.

bioRxiv : the preprint server for biology·2026
Same author

Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling.

bioRxiv : the preprint server for biology·2026
Same author

Cross-species consensus atlas of the primate basal ganglia.

bioRxiv : the preprint server for biology·2025
Same author

GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data.

iScience·2025
Same author

GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data.

bioRxiv : the preprint server for biology·2024
Same author

ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data.

IEEE transactions on visualization and computer graphics·2023
Same journal

Large-scale discovery platform enables identification of peptides targeting drug-resistant candidiasis.

Cell reports methods·2026
Same journal

A computational method to design broad-spectrum T cell-inducing vaccines applied to Betacoronaviruses.

Cell reports methods·2026
Same journal

MalDeepSeq panel: A targeted ultra-deep sequencing approach to trace drug resistance markers in Plasmodium falciparum.

Cell reports methods·2026
Same journal

Induced pluripotent stem cell-derived macrophages enable broad modeling of human inflammasome signaling.

Cell reports methods·2026
Same journal

Rapid discovery of cell-surface glycosylation regulators using a lectin-based magnetic CRISPR screen.

Cell reports methods·2026
Same journal

A real-time FRET ubiquitin transfer assay for quantitative characterization of ternary complexes in targeted protein degradation.

Cell reports methods·2026
查看所有相关文章

相关实验视频

Updated: Jul 11, 2025

Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection
09:19

Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection

Published on: July 6, 2022

4.9K

太空步行者使空间转录学数据的交互式梯度探索成为可能.

Chang Li1, Julian Thijssen1, Thomas Kroes1

  • 1Department of Radiology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.

Cell reports methods
|November 16, 2023
PubMed
概括
此摘要是机器生成的。

太空步行者是一个新的视觉分析工具,可以帮助研究人员探索空间转录学数据中的基因表达梯度. 它识别了转录组学上相似的细胞,以揭示组织结构并证实生物发现.

关键词:
CP:系统生物学 系统生物学数据可视化数据可视化基因表达梯度的基因表达梯度空间转录学 空间转录学视觉分析 视觉分析

更多相关视频

Trajectory Data Analyses for Pedestrian Space-time Activity Study
16:14

Trajectory Data Analyses for Pedestrian Space-time Activity Study

Published on: February 25, 2013

13.5K
Generation of Heterogeneous Drug Gradients Across Cancer Populations on a Microfluidic Evolution Accelerator for Real-Time Observation
10:24

Generation of Heterogeneous Drug Gradients Across Cancer Populations on a Microfluidic Evolution Accelerator for Real-Time Observation

Published on: September 19, 2019

6.4K

相关实验视频

Last Updated: Jul 11, 2025

Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection
09:19

Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection

Published on: July 6, 2022

4.9K
Trajectory Data Analyses for Pedestrian Space-time Activity Study
16:14

Trajectory Data Analyses for Pedestrian Space-time Activity Study

Published on: February 25, 2013

13.5K
Generation of Heterogeneous Drug Gradients Across Cancer Populations on a Microfluidic Evolution Accelerator for Real-Time Observation
10:24

Generation of Heterogeneous Drug Gradients Across Cancer Populations on a Microfluidic Evolution Accelerator for Real-Time Observation

Published on: September 19, 2019

6.4K

科学领域:

  • 计算生物学 计算生物学
  • 生物信息学是一种生物信息学.
  • 基因组学就是基因组学.

背景情况:

  • 空间转录学 (ST) 数据中的基因表达梯度揭示了关键的生物特征,如组织区和细胞状态转换.
  • 需要有效的可视化和分析工具来探索这些复杂的,高维数据集.

研究的目的:

  • 介绍SpaceWalker,这是一个视觉分析工具,旨在探索2D和3D空间转录学数据中的局部梯度结构.
  • 为了使用户能够识别转录组学上相似的细胞,并可视化组织结构.

主要方法:

  • 太空步行者利用局部内在的维度来指导种子位置的选择.
  • 一个泛滥填充算法根据高维数据拓识别出基于转录组学上相似的细胞.
  • 该工具在空间上对细胞进行了识别,并允许交互式检索基因表达梯度.

主要成果:

  • 已识别的细胞的空间投影突出显示了组织结构特征.
  • 对基因表达梯度的交互分析证实了已知的生物模式.
  • 太空步行者在不同的ST协议中展示了多功能性,并有效地扩展到大型3D数据集.

结论:

  • 太空步行者提供了一种有效的方法来探索空间转录组学数据中的基因表达梯度.
  • 该工具有助于揭示组织结构和验证生物假设.
  • 它的可扩展性和与各种ST协议的兼容性使其成为研究人员的宝贵资源.