对LC-MS实验因素的可变性分析及其对机器学习的影响
Tobias Greisager Rehfeldt1, Konrad Krawczyk1, Simon Gregersen Echers2
1Department of Mathematics and Computer Science, University of Southern Denmark, 5230 Odense, Denmark.
GigaScience
|November 20, 2023
概括
在质谱学 (MS) 中的机器学习 (ML) 需要大量的数据集. 转移学习的好处有限,因为项目内的数据同质性是ML模型性能的关键.
科学领域:
- 计算生物学是一种计算生物学.
- 分析化学是一种分析化学.
- 生物信息学是一种生物信息学.
背景情况:
- 机器学习 (ML),特别是深度学习 (DL),在质谱学 (MS) 中越来越多地用于数据分析和预测.
- 大数据集对于训练ML模型至关重要,这些数据集通常来自公共存储库.
- 跨公共MS数据集的数据采集,生物系统和实验设计的变化给ML应用带来了挑战.
研究的目的:
- 系统地分析公共MS存储库中的变化源.
- 评估这些因素对ML模型性能的影响.
- 评估转移学习在MS数据分析中的有效性.
主要方法:
- 对公共质谱数据集的系统分析.
- 评估不同数据集的ML模型性能.
- 转移学习技术的应用和评估.
主要成果:
- 项目内部的同质性明显高于项目之间的同质性.
- 对于不同于训练数据的数据集,ML模型的可转移性是有限的.
- 转移学习提高了模型性能,但不超过非预训练模型.
结论:
- 数据集的构建应优先考虑与未来测试案例的相似性,因为可转移性有限.
- 虽然转移学习提供了一些改进,但在这种情况下,它对非预训练模型的好处并不显著.
关键词:
生物信息学是一种生物信息学.数据挖掘是数据挖掘的一个方法.深度学习是一种深度学习.机器学习是机器学习.质谱测量质谱测量质谱测量质谱测量质量测量质谱测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量蛋白质组学 蛋白质组学统计 统计 统计 统计 统计转移学习转移学习更多相关视频
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