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Cell Signaling in Plants01:25

Cell Signaling in Plants

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Plant cells communicate to coordinate their cycle of growth, flowering and fruiting, and activities in roots, shoots, and leaves in response to the changing environmental conditions. Plant signaling is distinct from animal signaling. Plants primarily utilize enzyme-linked receptors, whereas the largest class of cell-surface receptors in animals are G-protein coupled receptors (GPCRs). Unlike animals, receptor tyrosine kinases are rare in plants. Instead, plants have a diverse class of...
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Most plants use the C3 pathway for carbon fixation. However, some plants, such as sugar cane, corn, and cacti that grow in hot conditions, use alternative pathways to fix carbon and conserve energy loss due to photorespiration. Photorespiration is the process that occurs when the oxygen concentration is high. Under such conditions, the rubisco enzyme in the Calvin cycle binds O2 instead of CO2, which halts photosynthesis and consumes energy.
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Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
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植物Reactome知识库:增强植物途径探索和OMICS数据分析的能力.

Parul Gupta1, Justin Elser1, Elizabeth Hooks1

  • 1Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.

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概括

植物Reactome是一个全面的植物通路知识库,为大米提供精选的通路和对129种物种的预测. 该资源可用于分析和可视化工厂路径内的omics数据,促进数据互操作性.

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科学领域:

  • 植物生物学 植物生物学
  • 生物信息学是一种生物信息学.
  • 系统生物学 系统生物学

背景情况:

  • 植物Reactome是植物通路的免费可访问的知识库.
  • 它包括对大米 (Oryza sativa) 的策划路径和对129种其他植物物种的预测.
  • 该知识库涵盖了新陈代谢,运输,信号和调节途径.

研究的目的:

  • 呈现植物反应体作为植物通路信息的全面资源.
  • 突出其作为动态数据发现平台的实用性.
  • 强调其对数据互操作性和FAIR数据原则的承诺.

主要方法:

  • 处理大米 (Oryza sativa) 的参考路径.
  • 为129个植物物种生成基于基因正统学的通路预测.
  • 整合omics数据 (基因表达,蛋白质组,代谢组) 用于分析和可视化.

主要成果:

  • 植物Reactome目前拥有339个参考路径.
  • 它涵盖了广泛的分类学多样性,从单细胞光自营植物到更高的植物.
  • 该平台允许用户在植物路径的背景下分析和可视化omics数据.

结论:

  • 植物Reactome作为一种有价值的动态资源,用于植物科学研究.
  • 它有助于探索植物中复杂的生物过程.
  • 该知识库支持数据互操作性,并遵守FAIR数据原则.