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DNA Helicases00:55

DNA Helicases

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DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
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Single-Strand DNA Binding Proteins01:03

Single-Strand DNA Binding Proteins

14.1K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
14.1K
DNA Topoisomerases02:02

DNA Topoisomerases

31.4K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
31.4K
The DNA Helix01:07

The DNA Helix

20.8K
Deoxyribonucleic acid, or DNA, is the genetic material responsible for passing traits from generation to generation in all organisms and most viruses. DNA is composed of two strands of nucleotides that wind around each other to form a spring-like structure called a double helix. However, the double helix is not perfectly symmetrical. Instead, there are regularly occurring grooves in the structure. The major groove occurs where the sugar-phosphate backbones are relatively far apart. This space...
20.8K
DNA as a Genetic Template02:05

DNA as a Genetic Template

22.0K
Two structural features of the DNA molecule provide a basis for the mechanisms of heredity: the four nucleotide bases and its double-stranded nature. The Watson-Crick model of double-helical DNA structure, proposed in 1952, drew heavily upon the X-ray crystallography work of researchers Rosalind Franklin and Maurice Wilkins. Watson, Crick, and Wilkins jointly received the Nobel Prize in Physiology or Medicine for their work in 1962. Franklin was, controversially, excluded from the prize for...
22.0K
Atomic Nuclei: Nuclear Magnetic Moment00:59

Atomic Nuclei: Nuclear Magnetic Moment

1.1K
All atomic nuclei are positively charged. When they have a nonzero spin, they behave like rotating charges. As a consequence of their charge and spin, these nuclei generate a magnetic field (B). This, in turn, gives rise to a magnetic moment (μ), which is randomly oriented in the absence of an external magnetic field. When an external magnetic field (B0) is applied, the magnetic moment vectors can align with the field or against it in 2 + 1 orientations. A hydrogen nucleus, which is just a...
1.1K

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相关实验视频

Updated: Jul 10, 2025

Analyzing and Building Nucleic Acid Structures with 3DNA
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Analyzing and Building Nucleic Acid Structures with 3DNA

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在DNA超级螺旋上.

Craig J Benham1

  • 1UC Davis Genome Center, University of California, One Shields Avenue, Davis, CA 95616, USA.

Nucleic acids research
|November 23, 2023
PubMed
概括
此摘要是机器生成的。

封闭圆形DNA (ccDNA) 中的超螺旋性影响其结构和能量. 超螺旋性的变化会影响DNA.

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科学领域:

  • 分子生物学分子生物学
  • 生物物理学的生物物理.
  • 结构生物学 结构生物学

背景情况:

  • 封闭圆形DNA (ccDNA) 具有固定的连接数 (L),将其二级和三级结构结合起来.
  • 这种拓约束不同于线性或断的DNA,影响DNA的行为.
  • 由L的整数值决定的超螺旋,具有显著的结构,能量和功能后果.

研究的目的:

  • 为了研究变化的超螺旋性如何影响ccDNA分子.
  • 探索与超级螺旋变化相关的能量成本和效益.
  • 分析超螺旋体对DNA结构转换和生物过程的影响.

主要方法:

  • 主要是理论方法,在历史上发展.
  • 在超螺旋体放松或增加期间分析自由能量变化.
  • 对超螺旋驱动的DNA结构转换进行理论模型的开发.

主要成果:

  • 改变超螺旋的过程可以释放或需要大量的自由能量.
  • 在核细胞附着和释放过程中检查了不受约束的超螺旋性的变化.
  • 开发了一个模型来计算基于超螺旋性的ccDNA拓体的平衡分布.

结论:

  • 超螺旋性是控制ccDNA结构,能量和功能的关键因素.
  • ccDNA的能量格局在很大程度上是由其超螺旋性形成的.
  • 该理论模型提供了对生物系统相关的超螺旋驱动DNA转换的见解.