基于质谱的代谢学处理和解释的计算方法.
Leonardo Perez de Souza1, Alisdair R Fernie1,2
1Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.
Essays in biochemistry
|November 24, 2023
概括
代谢学研究使用液态染色体质谱法 (LC-MS) 来分析复杂的生物样本. 本综述强调了处理LC-MS数据的计算工具,以帮助代谢物识别和分析.
科学领域:
- 生物化学 生物化学
- 分析化学 分析化学
- 生物信息学是一种生物信息学.
背景情况:
- 代谢学通过分析代谢组提供了深刻的生物学见解.
- 代谢物复杂性给数据分析带来了重大挑战.
- 液体染色学-质谱学 (LC-MS) 是广泛的代谢物覆盖的关键技术.
研究的目的:
- 在代谢学中审查LC-MS数据分析的计算工具.
- 解决将原始LC-MS数据转化为可量化的特征的挑战.
- 探索提取结构信息用于代谢物识别的方法.
主要方法:
- 专注于LC-MS数据处理的计算方法.
- 对特征量化工具的审查.
- 检查用于代谢物识别的光谱分析技术.
主要成果:
- 在LC-MS数据分析中确定了关键的计算障碍.
- 对现有的数据处理软件和算法的概述.
- 讨论有关代谢学数据分析当前趋势的讨论.
结论:
- 计算工具对于克服LC-MS数据复杂性至关重要.
- 有效的数据处理增强了代谢物识别和生物解释.
- 计算方法的进步正在推动基于质谱的代谢学领域.
关键词:
生物信息学是一种生物信息学.机器学习是机器学习.质谱测量质谱测量质谱测量质量测量质谱测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量代谢生物组的代谢生物组更多相关视频
08:232 in 1: One-step Affinity Purification for the Parallel Analysis of Protein-Protein and Protein-Metabolite Complexes
Published on: August 6, 2018
11.4K
07:34Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS
Published on: March 14, 2013
12.8K
相关概念视频
Mass Spectrometry: Complex Analysis
793
Mass spectrometry is an important technique for the identification of pure compounds. However, it has some limitations for the analysis of complex mixtures, often due to excessive fragmentation making the spectrum too complicated to decipher. Mass spectrometry can be combined with suitable separation methods in sequence, forming hyphenated methods, which are useful in the analysis of complex mixtures.
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
793
Mass Spectrometry: Overview
5.3K
Mass spectrometry is an analytical technique used to determine the molecular mass and molecular formula of a compound. The basic principle of mass spectrometry is to generate ions from the analyte molecule and measure these ion abundances against their molecular mass. One common type of ionization, known as electrospray ionization or EI, bombards the analyte molecules in the gas phase with high-energy electron beams. The electron beams displace an electron from the molecule and leave...
5.3K
Peptide Identification Using Tandem Mass Spectrometry
6.5K
Tandem mass spectrometry, also known as MS/MS or MS2, is an analytical technique that employs two mass analyzers. Essentially it is a series of mass spectrometers that helps isolate a particular biomolecule and then helps study its chemical properties.
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
6.5K
Mass Spectrometers
5.6K
This lesson details the instrumentation of a mass spectrometer—a physical instrument to perform mass spectrometry on analyte molecules and record the characteristic mass spectra. This is achieved via three chief functions:
5.6K
