核心依赖的翻译后修改指导新一类超变化的生物合成
Zeng-Fei Pei1, Lingyang Zhu2, Satish K Nair3,4,5
1Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Nature communications
|November 25, 2023
概括
研究人员发现了脱水,一种新的类型的超改性. 这些天然产品具有广泛的翻译后修改,只有五种酶安装了18种修改.
科学领域:
- 生物化学 生物化学
- 自然产品 化学 化学
- 生物信息学是一种生物信息学.
背景情况:
- 核糖体合成和翻译后改性 (RiPPs) 是一类多样化的天然产品.
- 基因组测序数据加速了新RiPP及其生物合成途径的发现.
研究的目的:
- 识别和描述超变RiPPs的新型类别.
- 阐明这些新型天然产品的生物合成机制.
主要方法:
- 对基因组数据的生物信息分析,以确定新的RiPP生物合成基因集群.
- 使用光谱方法阐明具有代表性的自然产品的结构.
- 在体外生物合成复制以确认酶功能和途径步骤.
- 生物物理研究,以调查酶基质相互作用.
主要成果:
- 脱水醇的鉴定,一种新型的超改性RiPPs类,具有Ser脱水和脊柱异环化.
- 对代表性脱水的卡纳佐胺胺的结构阐明,揭示了由五种酶催化的18种翻译后修饰.
- 证明一个DUF4135脱水域与独立的环酶域 (CcaM) 融合,催化了Ser脱水.
- 证据表明CcaM介导的脱水是依赖醇的,不需要领导,建立了依赖核心的反应顺序.
结论:
- 脱水醇代表了RiPP天然产品类的显著扩张.
- 酶CcaM采用一种新的Ser脱水机制,依赖于先前存在的醇部分.
- 鉴定到的生物合成机械表明,从相关的基因集群中发现结构多样化的支架的潜力.
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