多中心合作研究,以优化临床样本的质谱学工作流程
Oliver Kardell1, Christine von Toerne1, Juliane Merl-Pham1
1Metabolomics and Proteomics Core (MPC), Helmholtz Zentrum München,German Research Center for Environmental Health (GmbH), Munich 80939, Germany.
Journal of proteome research
|November 28, 2023
概括
为临床蛋白质组学标准化质谱 (MS) 工作流程对于系统医学至关重要. 实验室之间分享最佳实践显著提高了血和脑脊液分析数据的质量和可重复性.
科学领域:
- 临床蛋白质组学 临床蛋白质组学
- 系统医学是系统医学.
- 质谱法 (MS) 是一种质谱法.
背景情况:
- 将基于质谱 (MS) 的蛋白质组学集成到系统医学中,需要为临床试样提供标准化的工作流程.
- 不同的样本制备和液态染色体质谱法 (LC-MS) 技术需要确定共同的最佳实践.
研究的目的:
- 在CLINSPECT-M联盟内对蛋白质组学MS实验室的现有最佳实践进行基准和增强.
- 评估实验室间协作和协议交换对绩效的影响.
主要方法:
- 使用血和脑脊液 (CSF) 矩阵进行了两个连续的循环组合研究.
- 六个实验室应用了他们的最佳实践协议,随后在协议交换后进行了方法改进和重新分析.
- 基于识别 (ID),数据完整性,精度和可重复性来评估性能.
主要成果:
- 从第一轮测量到第二轮测量,个体实验室的性能有所改善.
- 专家驱动的最佳实践交流导致了数据质量和一致性的明显改善.
- 标准化工作强调了临床蛋白质组学工作流程中协作改进的价值.
结论:
- 对最佳实践的合作交流显著提高了MS基于蛋白质组学在临床环境中的表现.
- 标准化工作流程对于可靠地将蛋白质组学数据集成到系统医学中至关重要.
- 通过联盟努力进一步完善协议,可以直接改善临床样本分析的实际情况.
关键词:
在CSF的CSF中,在 LCMS 中使用.在R包中,mpwR临床样本 临床样本数据依赖的数据采集.数据独立的获取采集.一个实验室间的实验室.在实验室内实验室内.质谱测量质谱测量质谱测量质谱测量质量测量质谱测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量血等离子体是什么?轮回组合研究 (Round-robin study) 是一个循环组合研究.更多相关视频
07:34Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS
Published on: March 14, 2013
12.8K
08:08Quantitative Mass Spectrometric Profiling of Cancer-cell Proteomes Derived From Liquid and Solid Tumors
Published on: February 27, 2015
16.2K
相关概念视频
MALDI-TOF Mass Spectrometry
4.8K
Mass spectrometry is a powerful characterization technique that can identify and separate a wide variety of compounds ranging from chemical to biological entities, based on their mass-to-charge ratio (m/z). The instruments that allow this detection, known as mass spectrometers, have three components: an ion source, a mass analyzer, and a detector. These spectrometers differ based on the nature of their ion source and analyzers.
Matrix-assisted laser desorption ionization (MALDI) is a commonly...
Matrix-assisted laser desorption ionization (MALDI) is a commonly...
4.8K
Mass Spectrometry: Complex Analysis
792
Mass spectrometry is an important technique for the identification of pure compounds. However, it has some limitations for the analysis of complex mixtures, often due to excessive fragmentation making the spectrum too complicated to decipher. Mass spectrometry can be combined with suitable separation methods in sequence, forming hyphenated methods, which are useful in the analysis of complex mixtures.
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
792
Peptide Identification Using Tandem Mass Spectrometry
6.5K
Tandem mass spectrometry, also known as MS/MS or MS2, is an analytical technique that employs two mass analyzers. Essentially it is a series of mass spectrometers that helps isolate a particular biomolecule and then helps study its chemical properties.
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
6.5K
