普森表示:在随机基因调节网络的离散和连续模型之间架起桥梁
Xinyu Wang1, Youming Li2, Chen Jia1
1Applied and Computational Mathematics Division, Beijing Computational Science Research Center, Beijing 100193, People's Republic of China.
Journal of the Royal Society, Interface
|November 28, 2023
概括
加丁纳的波桑表示方式将静态基因表达的离散和连续模型联系起来. 这种联系适用于不受调节的基因,大约适用于具有大量蛋白质的受调节基因,从而使新的分析解决方案成为可能.
科学领域:
- 系统生物学 系统生物学
- 计算生物学 计算生物学
- 分子系统生物学 分子系统生物学
背景情况:
- 随机基因表达对细胞功能至关重要,可以使用离散或连续方法建模.
- 之前的工作通过加丁纳的Poisson表示方法建立了一个链接,用于简单的基因表达模型.
研究的目的:
- 系统地研究Poisson表示在复杂的随机基因调节网络中的适用性.
- 概括和扩展现有的关于离散和连续基因表达模型之间的关系的发现.
主要方法:
- 随机基因表达模型的理论分析.
- 在复杂的基因调节网络中应用加丁纳的Poisson表示法.
- 调查Poisson表示的条件 (不受调节的基因与受调节的基因,大量的蛋白质数量).
主要成果:
- 波桑表示法普遍关系到不受调节的基因的离散和连续模型,无论网络的复杂性如何.
- 波桑表示法通常无法将受调节基因的离散和连续模型联系起来.
- 通过Poisson表示来证明一个大致的关系被调节的基因在大的蛋白质数量的极限.
结论:
- 波桑表示法为不受调节的基因提供了离散和连续的随机基因表达模型之间的强有力的联系.
- 这些发现将Poisson表示的实用性扩展到复杂网络,并为受监管系统提供近似解决方案.
- 这项工作促进了先前难以处理的复杂基因表达模型的分析解决方案.
相关概念视频
Combinatorial Gene Control
8.4K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.4K
Regulation of Expression at Multiple Steps
917
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
917
Structure of a Gene
12.6K
A gene is the fundamental unit of heredity. Every individual has two copies of each gene, one inherited from each parent. Although most people contain the same genes, there is a small fraction that is slightly different amongst people. A gene with a small difference in its sequence of DNA bases forms different alleles, contributing to different phenotypes.
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
12.6K
Cis-regulatory Sequences
9.9K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.9K
Regulation of Expression Occurs at Multiple Steps
3.1K
3.1K
Physiological Pharmacokinetic Models: Assumption with Protein Binding
47
Physiological models with protein binding in pharmacokinetics offer a sophisticated approach to understanding drug disposition. These models consider drug-protein interactions, enabling them to effectively predict drug concentrations in different organs and tissues. This precision aids in accurate drug dosing, providing a significant advantage over conventional models. A key process within these models is equilibration, which ensures that drug concentrations achieve a steady state within the...
47


