通过由度梯度驱动的2D膜通过稳定状态流体运输的非平衡分子动力学
Daniel J Rankin1, David M Huang1
1Department of Chemistry, School of Physics, Chemistry and Earth Sciences, The University of Adelaide, Adelaide, SA 5005, Australia.
The Journal of chemical physics
|December 1, 2023
概括
我们开发了一种新的算法来模拟通过2D膜的流体运输,由使用分子动力学 (MD) 的度梯度驱动. 这种方法有效量化了流量,并与各种参数的连续理论保持一致.
科学领域:
- 计算物理学的计算物理.
- 材料科学是一种材料科学.
- 物理化学 物理化学
背景情况:
- 了解跨膜的流体运输对于分子分离和能量收集等应用至关重要.
- 二维 (2D) 材料为膜技术提供了独特的特性.
- 模拟非平衡过程,如度梯度驱动的流量,会带来计算方面的挑战.
研究的目的:
- 引入和验证一种新的非平衡算法,用于模拟通过度梯度驱动的2D膜通过稳定状态流体传输.
- 将这个新算法的效率和准确性与既有方法和连续理论进行比较.
- 为管理这种运输现象的分子层次机制提供见解.
主要方法:
- 开发一种用于分子动力学 (MD) 模拟的新型非平衡算法.
- 在度梯度下,通过2D膜模拟稳定状态的流体运输.
- 对Onsager相互关系的验证和压力驱动流量的已确定的非平衡MD算法.
- 将模拟结果与先前推导的连续理论进行比较.
主要成果:
- 这种新的算法成功地模拟了使用MD的2D膜中的度梯度驱动的稳定状态流体运输.
- 模拟的流量与Onsager的互惠关系一致,并且比对压力驱动的流量应用互惠性更有效地量化.
- 连续性理论准确地捕捉了模拟的流体流动在一系列的参数,与偏差观察到强的溶液-膜相互作用.
结论:
- 新的非平衡MD算法为研究2D膜中的度梯度驱动流体传输提供了一种高效准确的方法.
- 这些发现支持连续理论对这些系统的适用性,突出了强烈的溶液-膜相互作用下的局限性.
- 该研究提供了分子层面的理解,有利于设计用于能源,分离和传感应用的二维材料膜.
更多相关视频
05:56Spot Variation Fluorescence Correlation Spectroscopy for Analysis of Molecular Diffusion at the Plasma Membrane of Living Cells
Published on: November 12, 2020
2.8K
11:55Membrane Transport Processes Analyzed by a Highly Parallel Nanopore Chip System at Single Protein Resolution
Published on: August 16, 2016
11.7K
相关概念视频
Protein Diffusion in the Membrane
4.4K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
4.4K
Fluid Movement Between Compartments
531
The force applied by fluids against a surface, known as hydrostatic pressure, initiates the transfer of fluid among different compartments. Within our blood vessels, the blood's hydrostatic pressure is a result of the heart's pumping action. At the arteriolar end of capillaries, hydrostatic pressure (capillary blood pressure) exceeds the opposing colloid osmotic pressure created primarily by plasma proteins like albumin. This discrepancy in pressure propels plasma and nutrients from the...
531
Diffusion
192.7K
Diffusion is the passive movement of substances down their concentration gradients—requiring no expenditure of cellular energy. Substances, such as molecules or ions, diffuse from an area of high concentration to an area of low concentration in the cytosol or across membranes. Eventually, the concentration will even out, with the substance moving randomly but causing no net change in concentration. Such a state is called dynamic equilibrium, which is essential for maintaining overall...
192.7K
The Significance of Membrane Transport
26.8K
The transport of solutes across the cell membrane is essential for metabolic processes, like maintaining cell size and volume, generating the action potential, exchanging nutrients and gases, etc. Membrane transport can be either passive or active. It can be simple diffusion, facilitated, or mediated transport aided by transport proteins such as transporters and channels.
Transporters facilitate either an active or passive movement of solutes. They can allow a single-molecule transport down its...
Transporters facilitate either an active or passive movement of solutes. They can allow a single-molecule transport down its...
26.8K
Navier–Stokes Equations
518
For incompressible Newtonian fluids, where density remains constant, stresses show a linear relationship with the deformation rate, defined by normal and shear stresses. Normal stresses depend on the pressure exerted on the fluid and the rate of deformation in specific directions, which determines how fluid flows under varying pressures. Shear stresses, on the other hand, act tangentially across fluid layers. They explain how adjacent fluid layers slide relative to one another, connecting...
518
Facilitated Transport
127.0K
The chemical and physical properties of plasma membranes cause them to be selectively permeable. Since plasma membranes have both hydrophobic and hydrophilic regions, substances need to be able to transverse both regions. The hydrophobic area of membranes repels substances such as charged ions. Therefore, such substances need special membrane proteins to cross a membrane successfully. In facilitated transport, also known as facilitated diffusion, molecules and ions travel across a...
127.0K
