转录在分化过程中诱导染色体结构的上下文依赖的重塑
Sanjay Chahar1, Yousra Ben Zouari1, Hossein Salari2
1University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
PLoS biology
|December 4, 2023
概括
转录直接塑造染色体结构,在发育过程中形成空间域 (TAD). 这项研究表明基因活性,不仅仅是CTCF结合,驱动色素折叠,影响基因调节.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 发展生物学 发展生物学
背景情况:
- 甲基动物染色体形成离散的空间域,称为拓关联域 (TAD),被认为调节基因表达.
- 虽然TAD组织和基因活动之间存在相关性,但直接的机械联系和转录在塑造这些域中的作用仍然不清楚.
研究的目的:
- 研究如何染色体结构,特别是TADs,在小鼠胸细胞成熟过程中发生变化.
- 为了确定转录活动是否可以直接重塑染色体结构和TAD形成.
主要方法:
- 捕获Hi-C被用来分析染色体结构围绕关键的基因在发育时分化表达的基因.
- 进行了涉及胚胎干细胞中异位基因诱导的实验,以评估转录对域形成的影响.
主要成果:
- 在胸细胞成熟过程中观察到TAD边界的特定重塑事件,包括边界扩大以适应RNA聚合酶延长.
- 激活基因周围的子域的形成发生在CTCF结合部位没有改变的情况下.
- 在胚胎干细胞中异位基因激活成功地重复了域形成,表明对转录有直接作用.
结论:
- 转录过程能够直接重塑染色质结构,并驱动复杂的染色体折叠模式的形成.
- 这些发现表明,转录在建立TAD中起着因果作用,特别是在特定的基因组环境中,并提供了对发育过程中的基因调节的见解.
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