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¹H NMR Chemical Shift Equivalence: Homotopic and Heterotopic Protons01:03

¹H NMR Chemical Shift Equivalence: Homotopic and Heterotopic Protons

2.4K
Protons in identical electronic environments within a molecule are chemically equivalent and have the same chemical shift. The replacement test is a useful tool to identify chemical equivalence and predict NMR spectra. A substituent replaces each of the protons being examined and the resulting molecules are compared. If the same molecule is obtained, the protons are equivalent or homotopic. Replacement of any hydrogens in ethane by chlorine yields chloroethane because all six protons are...
2.4K
Stereoisomers02:32

Stereoisomers

12.9K
On the basis of mirror symmetry, stereoisomers of an organic molecule can be further classified into diastereomers and enantiomers. Diastereomers are stereoisomers that are not mirror images of each other. Substituted alkenes, such as the cis and trans isomers of 2-butene, are diastereomers, as these molecules exhibit different spatial orientations of their constituent atoms, are not mirror images of each other, and do not interconvert. Here, the interconversion is suppressed due to...
12.9K
¹H NMR: Complex Splitting01:13

¹H NMR: Complex Splitting

1.3K
A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied...
1.3K
Isomerism02:43

Isomerism

18.5K
Isomers are molecules with the same molecular formula but different structural arrangements. Isomers can be further classified into constitutional isomers and stereoisomers. Constitutional isomers differ in the connectivity of their constituent atoms. For example, 2-butanol and diethyl ether are constitutional isomers, as they have the same chemical formula, C4H10O, but differ in the connectivity of the carbon and oxygen atoms. Constitutional isomers have different physical and chemical...
18.5K
¹H NMR Chemical Shift Equivalence: Enantiotopic and Diastereotopic Protons00:58

¹H NMR Chemical Shift Equivalence: Enantiotopic and Diastereotopic Protons

1.8K
Replacing each alpha-hydrogen in chloroethane by bromine (or a different functional group) yields a pair of enantiomers. Such protons are called prochiral or enantiotopic and are related by a mirror plane. Enantiotopic protons are chemically equivalent in an achiral environment. Because most proton NMR spectra are recorded using achiral solvents, enantiotopic hydrogens yield a single signal.
In chiral compounds such as 2-butanol, replacing the methylene hydrogens at C3 produces a pair of...
1.8K
Disubstituted Cyclohexanes: cis-trans Isomerism02:37

Disubstituted Cyclohexanes: cis-trans Isomerism

12.0K
Depending upon the different spatial orientation of the substituents, the disubstituted cycloalkanes exhibit two types of stereoisomers. The cis isomers have the substituents on the same side of the ring, whereas the trans isomers have the substituents on the opposite sides. These stereoisomers exhibit different physical properties and cannot be interconverted without breaking the carbon-carbon bonds.
In cyclohexane, the substituents can occupy different positions generating distinct isomers....
12.0K

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相关实验视频

Updated: Jul 9, 2025

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes
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用映射和同位素信息进行后映射.

Siyoung Kim1

  • 1Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637 United States.

The journal of physical chemistry. B
|December 4, 2023
PubMed
概括
此摘要是机器生成的。

一个新的多尺度模拟工具 (mstool) 将粗粒度 (CG) 转换为全原子 (AA) 分子模型. 这种强大的后向映射工具只需要映射和异构信息,简化了复杂的分子模拟.

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科学领域:

  • 计算化学是一种计算化学.
  • 分子动力学分子动力学
  • 生物物理学的生物物理.

背景情况:

  • 粗粒度 (CG) 模拟为大型生物分子系统提供了计算效率.
  • 从CG模型中重建全原子 (AA) 表示对于详细的分析至关重要,但往往复杂.
  • 现有的逆向映射方法可能是计算密集的或需要广泛的参数化.

研究的目的:

  • 引入多尺度模拟工具 (mstool),这是一个新的,灵活的软件,用于CG到AA系统的逆向映射.
  • 提供一个用户友好的工具,需要最小的输入,用于准确的分子模型重建.
  • 为了证明该工具在处理各种生物系统方面的能力.

主要方法:

  • 该mstool采用了两步的逆向映射程序:随机放置由CG映射指导的AA原子,然后进行能量最小化.
  • 力量场的修改包括在非结合相互作用中使用等号函数来增强稳定性.
  • 添加了额外的扭力潜力,以保持基本的同位素特性 (cis / trans,二面体,奇拉).

主要成果:

  • 成功地将各种CG膜和蛋白质结构逆向映射到AA分辨率.
  • 在没有中间分辨率的情况下,实现了显著的分辨率增加 (脂质模型为34倍).
  • 在不同的分子系统中展示了该工具的稳定性和简单性.

结论:

  • 该mstool为CG转换为AA模型提供了一种高效且易于使用的方法.
  • 该工具简化了从大规模模拟中获得高分辨率分子细节的过程.
  • 自由可用的软件在计算分子研究中有助于更广泛的应用.