甲基因组测序检测到从聚集的环境中收集的空气样本中的人类呼吸道和肠道病毒
Nicholas R Minor1, Mitchell D Ramuta2, Miranda R Stauss1
1Wisconsin National Primate Research Center, Madison, WI, USA.
Scientific reports
|December 4, 2023
概括
空气样本的病原体不可知深度测序可以检测到广泛的人类病毒,改善了超出目标测试范围的公共卫生监测. 这种方法可以更广泛地了解流通中的病毒,以便更好地准备疫情爆发.
科学领域:
- 环境科学环境科学
- 病毒学 病毒学
- 公共卫生 公共卫生
背景情况:
- 目前的公共卫生监测很大程度上依赖于个人测试,这可能会受到测试行为的影响.
- 环境监测,如废水和空气采样,已成为人口层面数据的宝贵工具,但通常使用病原体特定的方法.
- 特定于病原体的方法提供了对病毒的不完整视图,缺少许多循环病毒.
研究的目的:
- 调查病原体不可知深度测序在空气样本中检测各种人类病毒的实用性.
- 扩大空气采样能力,用于公共卫生监测和疫情防控.
主要方法:
- 在从空气样本中提取的核酸上使用了序列独立的单级增强序列.
- 应用了深度测序方法来识别广泛的病毒病原体,没有预先选择.
主要成果:
- 成功检测出众多常见和意想不到的人类呼吸道和肠道病毒.
- 鉴定了A型和C型流感病毒,呼吸道同胞性病毒,人类冠状病毒,犀利病毒,SARS-CoV-2,轮状病毒,母体病毒和天体病毒.
- 证明了这种方法在捕获空气传播病毒组更全面的图像方面的潜力.
结论:
- 无病原体深度测序显著提高了空气采样的实用性,用于检测广泛的人类病毒.
- 这种方法提供了一个强大的,公正的工具来增强传统的监测方法,以改善公共卫生监测和流行病准备.
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