对T细胞受体谱的机器学习分析确定了自我反应的序列特征
Johannes Textor1, Franka Buytenhuijs2, Dakota Rogers3
1Data Science Group, Institute for Computing and Information Sciences, Radboud University, Nijmegen 6525 EC, the Netherlands; Medical BioSciences, Radboudumc, Nijmegen 6525 GA, the Netherlands.
Cell systems
|December 7, 2023
概括
机器学习确定了与自我反应相关的T细胞受体 (TCR) 序列特征. 自反应较弱的T细胞显示较长的CDR3β区域和酸性氨基酸,影响T细胞命运.
科学领域:
- 免疫学 免疫学 免疫学
- 计算生物学 计算生物学
- 基因组学就是基因组学.
背景情况:
- 由MHC分子呈现的T细胞受体 (TCR) 与自我的相互作用对T细胞功能和命运至关重要.
- 识别预测T细胞自我反应的特定TCR序列特征一直是一个重大挑战.
研究的目的:
- 为了区分低与高自我反应率的天真CD4+T细胞的TCRβ链中的序列模式.
- 开发一种机器学习模型,以基于TCR序列数据来预测T细胞自我反应.
主要方法:
- 在42只小鼠的TCRβ序列数据上训练了一种机器学习算法,以确定种群层面的差异.
- 利用具有固定的TCRβ序列的逆转基因小鼠来实验验证ML对自我反应性的预测.
主要成果:
- 弱自我反应的T细胞群体的特点是CDR3β区域的长度和酸性氨基酸的丰富.
- 该ML模型成功预测了自我反应性,进一步分析表明调节性T细胞的自我反应性高,慢性感染T细胞的自我反应性降低.
结论:
- TCR序列特征,特别是CDR3β长度和氨基酸组成,可以预测T细胞的自我反应性.
- 在TCR谱系多样性和自我反应性之间存在潜在的权衡,影响T细胞种群在各种生理和病理状态.
关键词:
CD4 T 细胞是 CD4 的 T 细胞.CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5 CD5在CDR3β链中.T细胞受体受体的 T 细胞受体.慢性感染 慢性感染不同质性的异质性机器学习是机器学习.在逆转基因小鼠中.自己反应的自我反应性.胸部发育 胸部发育的时间更多相关视频
相关概念视频
T Cell Activation and Clonal Selection
741
T cells are integral to our adaptive immune system, recognizing and effectively responding to foreign antigens. T cell activation and clonal selection are pivotal in orchestrating this immune response. This article elucidates these mechanisms, detailing the roles of cluster of differentiation (CD) markers, major histocompatibility complex (MHC) molecules, costimulatory signals, and the process of clonal selection.
Naive T cells that have not yet encountered an antigen express two primary CD...
Naive T cells that have not yet encountered an antigen express two primary CD...
741
Diversity of Antigen Receptors
595
Antigen receptors are essential components of the immune system crucial in defending the body against foreign invaders. These receptors are present on the surface of B and T cells, enabling them to recognize antigens and mount an appropriate immune response.
Before encountering any antigen, lymphocytes express these receptors. On B cells, the antigen receptor is a membrane-bound antibody molecule called BCR; on T cells, it is a T cell receptor or TCR. B and T cell receptors are composed of two...
Before encountering any antigen, lymphocytes express these receptors. On B cells, the antigen receptor is a membrane-bound antibody molecule called BCR; on T cells, it is a T cell receptor or TCR. B and T cell receptors are composed of two...
595
Antigens Involved in Adaptive Immunity
501
An antigen is any substance the immune system identifies as foreign and potentially harmful to the body, prompting an immune response. Antigens have two functional properties: immunogenicity and reactivity. Immunogenicity is the ability of an antigen to stimulate a specific immune response. At the same time, reactivity describes the antigen's ability to react with the cells and antibodies produced in response to it.
Complete Antigens
Complete antigens possess both immunogenicity and...
Complete Antigens
Complete antigens possess both immunogenicity and...
501
Special Features of Adaptive Immunity
829
The adaptive immune system, a crucial component of the overall immune response, offers a highly specialized defense against pathogens. It involves specific cell types and features, enabling it to combat infections effectively and efficiently.
The primary cell types involved in adaptive immunity are T cells and B cells. Each type has a unique role in defending the body against pathogens. T cells are responsible for cell-mediated immunity. They identify and eliminate infected cells directly,...
The primary cell types involved in adaptive immunity are T cells and B cells. Each type has a unique role in defending the body against pathogens. T cells are responsible for cell-mediated immunity. They identify and eliminate infected cells directly,...
829
Cells of the Adaptive Immune Response
994
The T and B lymphocytes of the adaptive immune system develop from common lymphoid progenitor cells in the bone marrow. These progenitors give rise to precursors that eventually develop into both T and B lymphocytes. As these precursors mature, they gain the ability to detect and respond to foreign antigens in the body, a process known as immunocompetence. Additionally, these precursors acquire self-tolerance, a process that ensures they do not react to self-antigens. This intricate system...
994
T Cell Types and Functions
1.0K
When T cells with CD4 markers are activated, they give rise to two types of effector cells: helper T cells and regulatory T cells. Meanwhile, T cells with CD8 markers differentiate into effector cytotoxic T cells. The differentiation of CD4 T cells into helper T cell subsets, such as Th1, Th2, and Th17 cells, is dependent on the antigen type, antigen-presenting cell, and regulatory cytokines.
Th1 cells stimulate dendritic cells to express necessary co-stimulatory molecules on their surfaces for...
Th1 cells stimulate dendritic cells to express necessary co-stimulatory molecules on their surfaces for...
1.0K


