对替代的外体依赖互动原子重塑的系统分析揭示了基因调节因子的多任务功能
Jonathan F Roth1, Ulrich Braunschweig2, Mingkun Wu2
1Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada; Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Sinai Health, Toronto, ON M5G 1X5, Canada; Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada.
Molecular cell
|December 8, 2023
概括
神经系统中的替代拼接会产生新的蛋白质相互作用. 这项研究揭示了特定的外因子如何改变蛋白质功能,影响RNA处理和出口.
科学领域:
- 分子生物学分子生物学
- 神经科学是一个神经科学.
- 遗传学 遗传学是一种遗传学.
背景情况:
- 替代拼接使蛋白质功能多样化,特别是在脊椎动物的神经系统中.
- 组织特异性的替代外因子经常调节蛋白质-蛋白质相互作用,但许多仍未表征.
研究的目的:
- 研究神经特异性替代外显子对蛋白质相互作用和细胞过程的功能影响.
- 利用亲和性净化质谱法 (AP-MS) 来识别由替代外子介导的新型蛋白相互作用.
主要方法:
- 使用亲和性净化质谱法 (AP-MS) 分析含有神经差异外形子的蛋白质.
- 检查了特定蛋白质候选物Chtop和Sap30bp,以检查由于替代拼接而导致的相互作用变化.
主要成果:
- 大约60%的分析的神经差异外形导致蛋白质相互作用的改变,影响蛋白质功能.
- 一个神经外子在Chtop中调节了与Prmt1和DExD-Box基酶的相互作用,影响RNA输出.
- Sap30bp中的一个神经外子改变了与RNA处理因子的相互作用,影响了迷你-intron拼接.
结论:
- AP-MS有效地揭示了由替代拼接影响的蛋白质的多样性作用.
- 替代性外显子在调节神经系统中蛋白质相互作用和相关的生物功能方面发挥着关键作用.
相关概念视频
Exon Recombination
3.6K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.6K
Alternative RNA Splicing
21.2K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.2K
Protein Complexes with Interchangeable Parts
2.5K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.5K
Protein Networks
4.0K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.0K
Nucleosome Remodeling
9.1K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.1K


