阶段分离减少了转录突破的细胞间变异性
Lijun Hong1, Zihao Wang1, Zhenquan Zhang1
1Guangdong Province Key Laboratory of Computational Science, Sun Yat-sen University, Guangzhou 510275, PR China; School of Mathematics, Sun Yat-sen University, Guangzhou, Guangdong Province, 510275, PR China.
Mathematical biosciences
|December 9, 2023
概括
液-液相分离可以减少基因表达噪声. 然而,更高的爆发频率阻碍了这种降噪,而爆发大小具有复杂的影响,影响了随机基因表达动态.
科学领域:
- 生物物理学的生物物理.
- 分子生物学分子生物学
- 系统生物学 系统生物学
背景情况:
- 基因表达本质上是随机的,通常发生在爆发.
- 实验表明,液体液相分离 (LLPS) 可以减少基因表达噪声.
- 了解破裂动力学与LLPS介导的降噪之间的相互作用至关重要.
研究的目的:
- 为了研究基因表达爆发在相位分离驱动的降噪中的作用.
- 开发一种理论模型,将LLPS与双态基因表达过程结合起来.
- 为了分析爆发频率和大小如何通过相位分离影响噪声降低.
主要方法:
- 开发了一种结合模型,包括相分离和两种状态的基因表达模型.
- 应用时间尺度分离方法来得出近似的分析解决方案.
- 计算了稀释阶段的预期,变异和噪声强度.
主要成果:
- 阶段分离的降噪能力因爆破频率的增加而减少.
- 爆破尺寸对降噪的影响是非单调的:它最初增加,然后减少.
- 该模型提供了关于突破动力学对LLPS介导的降噪的影响的定量见解.
结论:
- 基因表达突发动力学显著调节相位分离在减少转录噪声方面的有效性.
- 这些发现提供了更深入的机理理解LLPS对随机基因表达的影响.
- 这项工作跨越了相位分离和基因表达动态的领域,突出了突发参数的重要性.
相关概念视频
Transcription Attenuation in Prokaryotes
15.3K
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.3K
Cells Coordinate Growth and Proliferation
4.5K
Cell size is a significant factor impacting cellular design, function, and fitness. There exists some internal coordination by which cells double their masses before division, thus, achieving homeostasis. Coordination between cell growth and proliferation depends on the checkpoints in between cell cycle phases. Loss of coordination or failure in the checkpoint mechanism can drive the cell to uncontrolled growth and loss of cellular function. Like dividing cells that coordinate cellular growth,...
4.5K
Combinatorial Gene Control
8.4K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.4K
Chromatin Structure Regulates pre-mRNA Processing
7.0K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
7.0K
Regulation of Expression at Multiple Steps
916
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
916
Molecular Factors Affecting Cell Division
3.1K
Several external and internal factors influence the initiation and inhibition of cell division. For instance, the death of nearby cells or the release of human growth hormone (hGH) promotes cell division. In contrast, lack of hGH or crowding of cells can inhibit cell division.
Several proteins function as internal regulators to ensure each cell cycle stage is completed faithfully before proceeding to the next. Regulator molecules may act directly or influence the activity or production of other...
Several proteins function as internal regulators to ensure each cell cycle stage is completed faithfully before proceeding to the next. Regulator molecules may act directly or influence the activity or production of other...
3.1K


