一般化的迈凯利斯-门速率定律,具有时间变化的分子度
Roktaek Lim1,2, Thomas L P Martin1, Junghun Chae2
1Department of Biology, Hong Kong Baptist University, Kowloon, Hong Kong.
PLoS computational biology
|December 11, 2023
概括
一般化的迈凯利斯 - 门 (MM) 速率定律放松了模拟分子相互作用的准稳定状态假设. 这种新的有效时间延迟方案 (ETS) 准确地捕捉了度快速变化的系统中的动态.
科学领域:
- 生物化学 生物化学
- 系统生物学 系统生物学
- 化学工程是化学工程的重要组成部分.
背景情况:
- 一个多世纪以来,迈凯利斯-门 (MM) 速率定律是建模生物化学过程的基石.
- 它依赖于准稳定状态假设,即复杂度迅速达到平衡.
- 这种假设并不普遍有效,限制了MM的法律应用.
研究的目的:
- 为具有时间变化的度的分子相互作用提出一个概括的迈凯利斯-门 (MM) 速率定律.
- 引入有效的时间延迟方案 (ETS) 来建模这些动态.
- 将分析框架扩展到超出准稳定状态假设之外.
主要方法:
- 在MM利率法中放松准稳定状态要求.
- 根据预计的时间延迟效应,制定有效的时间延迟方案 (ETS).
- 应用ETS来建模具有活性度变化的分子复合物形成.
主要成果:
- 一般化的MM速率法和ETS为具有时间变化的分子度的系统提供了框架.
- 在蛋白质-蛋白质和蛋白质-DNA相互作用的建模中观察到显著的改善.
- 排放交易系统准确地解释和预测短暂或节奏动态.
结论:
- 有效时间延迟方案 (ETS) 提供了一个比传统的近乎稳定状态假设更强大的方法.
- 这种通用模型对于理解复杂的生物动态,如细胞适应和昼夜节律至关重要.
- ETS扩大了动态系统生化建模的预测能力.
相关概念视频
Nonlinear Pharmacokinetics: Michaelis-Menten Equation
362
The Michaelis–Menten equation is a fundamental model for describing capacity-limited kinetics in drug metabolism. It offers insights into the rate of decline of plasma drug concentration Cp over time, with Vmax and KM as pivotal parameters.
Vmax represents the maximum achievable process rate, while KM, known as the Michaelis constant, signifies the drug concentration at which the process rate reaches half its maximum. This relationship between Vmax, KM, and Cp gives rise to three distinct...
Vmax represents the maximum achievable process rate, while KM, known as the Michaelis constant, signifies the drug concentration at which the process rate reaches half its maximum. This relationship between Vmax, KM, and Cp gives rise to three distinct...
362
Introduction to Enzyme Kinetics
20.1K
Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
20.1K
Determination of Michaelis Constant and Maximum Elimination Rate
115
The Michaelis constant (KM) and the theoretical maximum process rate (Vmax) are vital parameters in the Michaelis-Menten equation, central to many biochemical reactions. They provide essential insights into enzyme kinetics and drug metabolism.
These parameters can be estimated by analyzing plasma concentration data post-drug administration. A notable example of this application is phenytoin, a drug with capacity-limited kinetics. It's recommended that phenytoin should be administered at two...
These parameters can be estimated by analyzing plasma concentration data post-drug administration. A notable example of this application is phenytoin, a drug with capacity-limited kinetics. It's recommended that phenytoin should be administered at two...
115
The Integrated Rate Law: The Dependence of Concentration on Time
35.2K
While the differential rate law relates the rate and concentrations of reactants, a second form of rate law called the integrated rate law relates concentrations of reactants and time. Integrated rate laws can be used to determine the amount of reactant or product present after a period of time or to estimate the time required for a reaction to proceed to a certain extent. For example, an integrated rate law helps determine the length of time a radioactive material must be stored for its...
35.2K
Enzyme Kinetics
96.8K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
96.8K
Concentration and Rate Law
30.9K
The rate of a reaction is affected by the concentrations of reactants. Rate laws (differential rate laws) or rate equations are mathematical expressions describing the relationship between the rate of a chemical reaction and the concentration of its reactants.
For example, in a generic reaction aA + bB ⟶ products, where a and b are stoichiometric coefficients, the rate law can be written as:
For example, in a generic reaction aA + bB ⟶ products, where a and b are stoichiometric coefficients, the rate law can be written as:
30.9K


