为19F NMR化学转移预测提供QM辅助ML
Patrick Penner1, Anna Vulpetti2
1Global Discovery Chemistry, Biomedical Research, Novartis AG, 4056, Basel, Switzerland. patrick.penner@novartis.com.
Journal of computer-aided molecular design
|December 11, 2023
概括
使用机器学习 (ML) 和量子力学 (QM) 方法预测-19的NMR化学转移可以协同提高药物设计的准确性. 这种综合方法可以在大型图书馆中加强化分子的选.
科学领域:
- 药用化学 医学化学
- 计算化学计算化学
- 核磁共振光谱学 核磁共振光谱学
背景情况:
- 联体观察的19F核磁共振是一种高通量方法,用于断基于片段的药物设计中的化分子选.
- 预测19F NMR化学转移使得能够生成聚焦选库.
- 目前的预测方法依赖于在现有碎片数据上训练的机器学习 (ML).
研究的目的:
- 为了提高19F NMR化学转移预测对任意化分子的准确性.
- 为了解决ML方法的局限性,当训练数据稀疏或不相似时.
- 开发一种混合方法,将ML和量子力学 (QM) 结合起来,以改善预测.
主要方法:
- 开发了一种结合根性指纹和ML用于化学转移预测的方法.
- 集成的基于QM的计算,以帮助ML预测训练集的相似空间之外的化合物.
- 实施了基于复合特征和与培训数据相似性的数据分割策略.
主要成果:
- ML和QM方法的协同组合显著优于单独使用的任何方法.
- 在专有化碎片库 (LEF) 和公共Enamine数据集上验证了性能.
- 为ML和QM工作流提供开源工具和模型.
结论:
- 混合ML和QM方法为准确的19FNMR化学转移预测提供了强大的策略.
- 这种方法提高了基于碎片的药物发现活动的效率和范围.
- 开发的工具有助于NMR查新型化化合物的更广泛应用.
相关概念视频
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Absorption signals of all the protium nuclei...
Absorption signals of all the protium nuclei...
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Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
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A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied...
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Many organic, inorganic, and biological molecules contain spin-half nuclei such as nitrogen-15, fluorine-19, and phosphorus-31. As a result, NMR studies of these nuclei have found extensive applications in chemical and biological research.
While fluorine-19 and phosphorous-31 have high natural abundances (100%) and positive gyromagnetic ratios, nitrogen-15 has a low natural abundance and a negative gyromagnetic ratio. However, nitrogen-15 is still preferred over nitrogen-14 (which has a...
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Protons in identical electronic environments within a molecule are chemically equivalent and have the same chemical shift. The replacement test is a useful tool to identify chemical equivalence and predict NMR spectra. A substituent replaces each of the protons being examined and the resulting molecules are compared. If the same molecule is obtained, the protons are equivalent or homotopic. Replacement of any hydrogens in ethane by chlorine yields chloroethane because all six protons are...
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