关于使用PP1/BS4共分离和PP4表型特异性标准用于序列变异致病性分类的ClinGen指南
Leslie G Biesecker1, Alicia B Byrne2, Steven M Harrison3
1Center for Precision Health Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
American journal of human genetics
|December 16, 2023
概括
这项研究通过开发用于共同分离和表型证据的实用启发式来完善遗传变异分类. 它将它们整合到贝叶斯框架中,以改进变种病原性评估.
科学领域:
- 遗传学 遗传学是一种遗传学.
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
背景情况:
- 2015年美国医学遗传学和基因组学学院 (ACMG) 和分子病理学协会 (AMP) 的指导方针为变异分类提供了标准.
- 然而,应用遗传模式标准 (PP1,BS4) 和区分疾病基因鉴定与变异性致病性仍然具有挑战性.
- 之前的指导缺乏关于自体逆向和X链接遗传模式的具体细节.
研究的目的:
- 开发一种实用的启发式方法,用于评估变体分类中的遗传共分离和表型证据.
- 解决应用ACMG/AMP标准的挑战,特别是复杂的遗传模式.
- 将这些证据类型整合到贝叶斯框架中,以进行可靠的变种致病性评估.
主要方法:
- 一种混合的诱导和演方法,使用真实疾病的例子.
- 开发一种用于遗传共同分离证据的启发式方法.
- 确定表型 (PP4) 和共同分离标准之间的合.
- 对位点异质性和负证据的分析.
- 创建基于表型和共同分离证据的基于点的系统.
主要成果:
- 开发了一种用于遗传共同分离证据的实用启发式.
- 发现表型标准 (PP4) 与共同分离密不可分.
- 一个位点的负证据为位点异质性疾病中的其他位点提供了积极证据.
- 建立了一个以分数为基础的系统来评估表型和共同分离.
结论:
- 开发的启发式和基于点的系统为变种分类提供了实际指导.
- 整合到贝叶斯框架与2015年ACMG/AMP指南保持一致并增强.
- 这种方法改善了对变异性病原性的评估,特别是在复杂的遗传疾病中.
更多相关视频
09:37Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
Published on: August 15, 2019
9.8K
09:34Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
33.8K
相关概念视频
Single Nucleotide Polymorphisms-SNPs
15.1K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
15.1K
Comparing Copy Number Variations and SNPs
17.7K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
17.7K
Genome-wide Association Studies-GWAS
13.5K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
13.5K
Incomplete Dominance
22.6K
Gregor Mendel's work (1822 - 1884) was primarily focused on pea plants. Through his initial experiments, he determined that every gene in a diploid cell has two variants called alleles inherited from each parent. He suggested that amongst these two alleles, one allele is dominant in character and the other recessive. The combination of alleles determines the phenotype of a gene in an organism.
22.6K
