生物信息学分析和识别与脊椎间盘退化相关的铁亡相关的枢纽基因
Feng Jiang1, Xinxin Li1, Zhiyang Xie2
1Southeast University Medical College, No. 87, Dingjiaqiao Road, Nanjing, 210009, Jiangsu, China.
Biochemical genetics
|December 16, 2023
概括
细胞死亡过程 - - 铁亡与由于椎间盘退化 (IDD) 的腰部疼痛 (LBP) 有关. 这项研究确定了关键的铁灭基因 (PTEN,EGFR) 作为IDD的潜在生物标志物.
科学领域:
- 生物医学研究的研究.
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
背景情况:
- 腰部疼痛 (LBP) 影响大约80%的人,通常与椎间盘退化 (IDD) 有关.
- 铁,一种由铁和脂质过氧化驱动的编程细胞死亡形式,在疾病发病过程中越来越被认可,但其在IDD中的作用尚不清楚.
研究的目的:
- 确定关键的铁与相关的基因和途径,涉及到IDD的发展和进展.
- 为了探索与亡相比,IDD中的铁亡的特异性.
主要方法:
- 分析了三个GEO微阵列数据集用于IDD.
- 利用权重基因共同表达网络分析 (WGCNA) 来识别与IDD相关的基因模块.
- 叠加的IDD模块与ferroptosis和apoptosis基因组用于识别相关的基因.
- 功能丰富,蛋白质-蛋白质相互作用网络分析和物流回归被用来识别枢纽基因.
主要成果:
- 确定了35个与铁灭相关的模块基因 (FRMG) 和142个与灭相关的模块基因 (ARMG).
- 确定PTEN和EGFR是显著的铁灭枢纽基因,CTNNB1是灭枢纽基因,区分IDD患者和对照组 (P<0.05).
- 在IDD中,ferroptosis表现出比apoptosis更高的特异性,ROC AUC分别为0.792和0.730.
结论:
- 铁死在IDD的发病和进展中起着重要作用.
- PTEN和EGFR是IDD的潜在诊断生物标志物.
- 这些发现为IDD中的铁亡机制提供了新的见解,并提出了潜在的治疗点.
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