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相关概念视频

Diversity of Antigen Receptors01:28

Diversity of Antigen Receptors

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Antigen receptors are essential components of the immune system crucial in defending the body against foreign invaders. These receptors are present on the surface of B and T cells, enabling them to recognize antigens and mount an appropriate immune response.
Before encountering any antigen, lymphocytes express these receptors. On B cells, the antigen receptor is a membrane-bound antibody molecule called BCR; on T cells, it is a T cell receptor or TCR. B and T cell receptors are composed of two...
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The Two-State Receptor Model01:29

The Two-State Receptor Model

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The two-state receptor model explains a drug's interaction with receptors, such as G protein-coupled receptors and ligand-gated ion channels, to induce or inhibit a biological response. When no natural ligands are present, a receptor exists in an equilibrium of inactive (Ri) and active (Ra) conformations. The inactive form does not produce a response, while the active form generates a basal effect known as constitutive activity.
The binding affinity of a drug determines its interaction with...
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Signal Sequences and Sorting Receptors01:41

Signal Sequences and Sorting Receptors

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Signal sequences are short amino acid sequences that guide newly synthesized proteins to their proper location within the cell. Classical signal sequences are fifteen to sixty amino acids long and present at the N-terminus of a polypeptide chain. Each signal sequence has a conserved segment of basic residues towards their N terminus, a hydrophobic core, and a C-terminus rich in polar residues. The C-terminus also contains a signal cleavage site and features a -3 -1 sequence motif. The -3-1...
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Leaky Scanning02:28

Leaky Scanning

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During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
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B Cell Activation and Differentiation01:24

B Cell Activation and Differentiation

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The adaptive immune response, a sophisticated defense mechanism, relies on the activation and differentiation of B lymphocytes, or B cells. These processes enable our bodies to mount a tailored response against specific pathogens such as bacteria, free virus particles, toxins, and parasites.
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G Protein-coupled Receptors01:15

G Protein-coupled Receptors

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G Protein-Coupled Receptors or GPCRs are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to sensory stimuli such as light, odors, hormones, cytokines, or neurotransmitters.
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T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
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基于语言模型的B细胞受体序列嵌入可以有效地编码受体特异性.

Meng Wang1, Jonathan Patsenker2, Henry Li2

  • 1Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.

Nucleic acids research
|December 18, 2023
PubMed
概括
此摘要是机器生成的。

这项研究对B细胞受体 (BCR) 序列的嵌入模型进行了基准测试,揭示了BCR特定的嵌入和配对链数据可以提高抗体预测的准确性. 这些发现有助于抗体的发现和分析.

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科学领域:

  • 免疫信息学是指免疫信息学.
  • 计算生物学 计算生物学
  • 抗体工程 抗体工程

背景情况:

  • B细胞受体 (BCR) 的高通量测序对于理解抗体多样性至关重要.
  • 生物学上有意义的BCR序列嵌入对于抗体研究中的预测建模具有价值.
  • 现有的BCR嵌入方法缺乏直接的性能基准测试和序列长度和配对链数据影响的探索.

研究的目的:

  • 为了对BCR序列的各种嵌入模型的性能进行基准测试.
  • 评估输入序列长度和配对链信息对预测准确性的影响.
  • 为改善抗体分析和发现下游预测应用提供见解.

主要方法:

  • 使用BCR序列的多个嵌入模型的性能评估.
  • 预测BCR序列特性和受体特异性.
  • 对BCR特定嵌入的比较分析与一般蛋白质语言模型.
  • 评估全长重链和配对轻链序列的影响.

主要成果:

  • 大多数评估的嵌入模型有效地捕捉了BCR序列属性和特异性.
  • 在预测特异性方面,BCR特定的嵌入显示出与一般蛋白质语言模型相比的轻微优势.
  • 整合全长重链和配对轻链序列显著改善了所有嵌入模型的预测性能.

结论:

  • 该研究为BCR嵌入模型提供了一个全面的性能基准.
  • 配对链信息和全长序列对于提高抗体研究的预测准确性至关重要.
  • 这些发现将指导先进抗体分析和药物发现的嵌入策略的选择和应用.